View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_10 (Length: 894)
Name: NF3918_low_10
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_10 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
| [»] scaffold1284 (1 HSPs) |
| | |
|
| [»] scaffold0318 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 833; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 18 - 880
Target Start/End: Complemental strand, 3220570 - 3219712
Alignment:
| Q |
18 |
aaccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220570 |
aaccacgagtggcgaaggagaacgaatcgcgaaagcagcgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcag |
3220471 |
T |
|
| Q |
118 |
tgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3220470 |
tgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgtttttgtttcgcg |
3220371 |
T |
|
| Q |
218 |
aagaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagcttttaacaaatcacttgtcaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3220370 |
aagaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgttt--agcttttaacaaatcacttgtcaata |
3220273 |
T |
|
| Q |
318 |
ctgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaagaccaaagcagaggagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220272 |
ctgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaagaccaaagcagaggagt |
3220173 |
T |
|
| Q |
418 |
tatcaggttcatgatatgatgcacatctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaaccc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220172 |
tatcaggttcatgatatgatgcacatctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaaccc |
3220073 |
T |
|
| Q |
518 |
aaaatctgatcacgaatcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220072 |
aaaatctgatcacgaatcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctc |
3219973 |
T |
|
| Q |
618 |
tgatgcacggatataattttgttgcagaaagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219972 |
tgatgcacggatataattttgttgcagaaagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgc |
3219873 |
T |
|
| Q |
718 |
agaaagagccattggaaagccgcaagtggggggaaatgatgatattgcaaaaagtttagaattttttacatgagctttactgcagcgctatctgaccact |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219872 |
agaaagagccattggaaagccgcaagtggggggaaatgatgatattgcaaaaagtttagaa--ttttacatgagctttactgcagcgctatctgaccact |
3219775 |
T |
|
| Q |
818 |
atcagtagtgctactctaaacttcaatgcaaaatggggtttcgtcgtgtcgcacccatgagcc |
880 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219774 |
atcagtagtgctactctaaacttcaatgcaaaatggggtttcgtcgtgtcgcacccatgagcc |
3219712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 302 - 679
Target Start/End: Original strand, 15985303 - 15985677
Alignment:
| Q |
302 |
aaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgacctt-gattactacttaaaaa |
400 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| || | |
|
|
| T |
15985303 |
aaatcacttgtcaatactgtggctga----gctggcaatcgtcacacttaggacaagacttgcttatttgagggatcaacctttgattactacttcaaga |
15985398 |
T |
|
| Q |
401 |
gaccaaagcagaggagttatcaggttcatgatatgatgcacatctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtgg |
500 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15985399 |
gttcaaatcagaggagttatcaggtgcatgatatgatgcacatctacatctgatggtttttccagtacacacaagatagaccatgcaaagttgaaagtgg |
15985498 |
T |
|
| Q |
501 |
ataaaataggagaacccaaaatctgatcacgaatcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatat |
600 |
Q |
| |
|
| |||| |||||||| ||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||| ||||| |
|
|
| T |
15985499 |
gtcaaattggagaacctaaactccgatcatgaatcgatgaatattttataggtagtccatacaaggaaaacaacatgcgaagggcgccgctgctcaatat |
15985598 |
T |
|
| Q |
601 |
ccttgactaaatagctctgatgcacggatataattttgttgcagaaagggccgctggaaagccgcaaggtgaggatggc |
679 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
15985599 |
ctttgactaaatagctctgatgcacggatagcattttgttgtagaaagggctgctggaaagccacaaggtgaggatggc |
15985677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 12504994 - 12504720
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12504994 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
12504895 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
12504894 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
12504795 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
12504794 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
12504720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 14680932 - 14681206
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14680932 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
14681031 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
14681032 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
14681131 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
14681132 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
14681206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 39587607 - 39587451
Alignment:
| Q |
25 |
agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgtt--------------cttcc |
110 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
39587607 |
agtggcgaatgagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcgaatcttgttcttcc |
39587508 |
T |
|
| Q |
111 |
cattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataa |
167 |
Q |
| |
|
||||||||||||||| | |||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
39587507 |
cattcagtgtaagcaagattctccgttccagcttcgcgcgctgcatctgtgagataa |
39587451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 821 - 858
Target Start/End: Original strand, 15985932 - 15985969
Alignment:
| Q |
821 |
agtagtgctactctaaacttcaatgcaaaatggggttt |
858 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15985932 |
agtagcgctactctaaacttcaatgcaaaatggggttt |
15985969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 763
Target Start/End: Original strand, 15985680 - 15985738
Alignment:
| Q |
704 |
cctggaaaggttgcagaaagagccattggaaagccgcaagtggggggaaatgatgatatt |
763 |
Q |
| |
|
||| |||||||||||||||| |||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
15985680 |
ccttgaaaggttgcagaaagggccaatggaaagccgcaag-agggggaaacgatgatatt |
15985738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 173787 - 173513
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
173787 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
173688 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
173687 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
173588 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
173587 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
173513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 143993 - 143719
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || |||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
143993 |
gagtggagaaggagaacgaaccgcgaaagtagcgaaggcgagatcgttgaaagaatccaggtgctgagcaatgaatcttgttcttcccattcagtgtaag |
143894 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| ||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
143893 |
caggattctccgttccagcttcgcacgctgcatctgtgagataaaccgatggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
143794 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
143793 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
143719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 44198171 - 44197897
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44198171 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
44198072 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
44198071 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
44197972 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
44197971 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
44197897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 24 - 293
Target Start/End: Complemental strand, 20793713 - 20793444
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20793713 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgatatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
20793614 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|| | |||| |||||| |||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
20793613 |
catgattctccgttccagcttcgcgcgctgcatctgtgagataaacctgtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
20793514 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
20793513 |
accttcgacttgttgcttccattgaaggtagtttgtatcatcaagcttaacagaaactacttgtttgaag |
20793444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 23928980 - 23929254
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23928980 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaattcaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
23929079 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| || | |||||| |||||||||||| ||||||||||||||| | ||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
23929080 |
caggattatccgttccagcttcgcgcgctgcatctgtgagataaatcagtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
23929179 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
23929180 |
accttcaacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
23929254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 301 - 607
Target Start/End: Complemental strand, 23729406 - 23729106
Alignment:
| Q |
301 |
caaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||| |||| ||| || | |
|
|
| T |
23729406 |
caaatcacttgtcaatactgtg---gtc-gagctggcaatagtcacacttaggacagaacttgcttatttgagagatcaacattggttaccactgtaaga |
23729311 |
T |
|
| Q |
401 |
gaccaaagcagaggagttatcaggttcatgatatgatgcacatctacatcttacggtttttc-cagtacac-acaagatata-ccatgcaaagttgaaag |
497 |
Q |
| |
|
|||||| ||| |||||| | ||||| ||||||| |||||||||||| |||||||| | ||| |||| ||| | ||||||||||| ||||| |
|
|
| T |
23729310 |
gaccaaggcataggagtcaccaggtgcatgata-----cacatctacatcaggtggtttttctgatcgcactacaatatagacccatgcaaagtggaaag |
23729216 |
T |
|
| Q |
498 |
tggataaaataggagaacccaaaatctgatcacgaatcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaa |
597 |
Q |
| |
|
||| | | | ||||||||| ||||||||||||||||| |||| || ||| |||||| | | |||||| ||||||||||||||||| | |||||| || |
|
|
| T |
23729215 |
tgggtgtagtgggagaaccctaaatctgatcacgaatcaatgagtactttgtaggtaacccacacaaggcaaacaacatgaaaagggcattgctgctcaa |
23729116 |
T |
|
| Q |
598 |
tatccttgac |
607 |
Q |
| |
|
| |||||||| |
|
|
| T |
23729115 |
tttccttgac |
23729106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 48513447 - 48513721
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48513447 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
48513546 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
48513547 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
48513646 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
48513647 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
48513721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 48727889 - 48728163
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
48727889 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccatttagtgtaag |
48727988 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
48727989 |
caggattctccgttccagctttgcgcgctgcatgtgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
48728088 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
48728089 |
accttcgacttgttgtttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
48728163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 3718237 - 3718514
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
3718237 |
ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcaaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcggtg |
3718336 |
T |
|
| Q |
120 |
taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa |
219 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||| | |
|
|
| T |
3718337 |
taagcaggattcttcgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcg-a |
3718435 |
T |
|
| Q |
220 |
gaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| | |||||||| |||| |
|
|
| T |
3718436 |
gaacaccttcgacttgttgcttccattaaaggtagtttgtatcatcaagcttgacagaaactagttgtttgaaggtttt |
3718514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 42105419 - 42105178
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42105419 |
gagtggcgaaggagaacgaatcgcgaaagtagccaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
42105320 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | |||||||| |
|
|
| T |
42105319 |
caggattctcggttccagcttcgcgcgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccacgaagaac |
42105220 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatc |
265 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42105219 |
accttcaacttgttgcttccattgaaggtagttcgtatcatc |
42105178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 34529808 - 34529860
Alignment:
| Q |
66 |
atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt |
118 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| |||||||||||||| |
|
|
| T |
34529808 |
atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt |
34529860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 45574882 - 45574934
Alignment:
| Q |
66 |
atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt |
118 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| |||||||||||||| |
|
|
| T |
45574882 |
atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt |
45574934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 17990492 - 17990443
Alignment:
| Q |
66 |
atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattc |
115 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
17990492 |
atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattc |
17990443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 29652048 - 29651774
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29652048 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
29651949 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
29651948 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
29651849 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
29651848 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
29651774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 36678978 - 36679252
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36678978 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
36679077 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
36679078 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
36679177 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
36679178 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
36679252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 36662800 - 36662526
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36662800 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaagccgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
36662701 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
36662700 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
36662601 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
36662600 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
36662526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 23203822 - 23204100
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
23203822 |
ccacgagtggcgaaggagaacgaatcgcgaaagtagcaaaggcgaaatcgttgaaagaatccaggtgtagagcaattaatcgtgttcttcccattcagtg |
23203921 |
T |
|
| Q |
120 |
taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa |
219 |
Q |
| |
|
||| |||| |||| |||||||||| | || ||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
23203922 |
taaacaggattctccgttcctgctccacgtgctgcatttatgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaa |
23204021 |
T |
|
| Q |
220 |
gaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||| |||||||| |||| |
|
|
| T |
23204022 |
gaacaccttcgacttgttgcttccattgaaggtagttcgtataatcaagcttaacagaaagtacttgtttgaaggtttt |
23204100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 43560431 - 43560199
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttctt------cccat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
43560431 |
ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggtgcagagcaatgaatcttgttcttgttcttccaat |
43560332 |
T |
|
| Q |
114 |
tcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgttt |
213 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |
|
|
| T |
43560331 |
tcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttc |
43560232 |
T |
|
| Q |
214 |
cgcgaagaacaccttcgacttgttgcttccattg |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
43560231 |
cgcgaagaacaccttcga-ttgttgcttccattg |
43560199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 38327706 - 38327980
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38327706 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
38327805 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
38327806 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
38327905 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
38327906 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
38327980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 55488922 - 55488644
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55488922 |
ccacgagtggcgaaggagaacgaaccgcgaaagtagcgaaggcgaaatcgttgaaagaacccaggtgcagagcaatgaatcttgttcttcccattcagtg |
55488823 |
T |
|
| Q |
120 |
taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa |
219 |
Q |
| |
|
||||||| |||| |||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
55488822 |
taagcagaattctccgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaa |
55488723 |
T |
|
| Q |
220 |
gaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
55488722 |
gaacaccttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaatagaaactacttgtttgaaggtttt |
55488644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 46073624 - 46073352
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46073624 |
gagtggcaaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
46073525 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| | | |||||| |||||||||| |
|
|
| T |
46073524 |
caggattctccgttccagcttcgcgcgctgcatctgtgagataaacc--tggaatctcaggtgaaatcacaaatttcaacatcttcgttccgcgaagaac |
46073427 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
46073426 |
accttcgacttgttgtttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
46073352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 35029014 - 35029066
Alignment:
| Q |
66 |
atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt |
118 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| |||||||||||||| |
|
|
| T |
35029014 |
atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt |
35029066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 52609025 - 52609299
Alignment:
| Q |
24 |
gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52609025 |
gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag |
52609124 |
T |
|
| Q |
124 |
caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac |
223 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
52609125 |
caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac |
52609224 |
T |
|
| Q |
224 |
accttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
52609225 |
accttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt |
52609299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 52887984 - 52887707
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52887984 |
ccacgagtggcgaaggagaacgaatcgcgaaagtagtgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtg |
52887885 |
T |
|
| Q |
120 |
taagcaggtttcttcgttcctgcttcg----cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcg |
215 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||||||||| | ||| || || |
|
|
| T |
52887884 |
taagcaggattctccgttcctgcttcgtgcgcgcgctgcaactgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcattccg |
52887785 |
T |
|
| Q |
216 |
cgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
52887784 |
cgaagaacaccttcgacttgttgcttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag |
52887707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 29887230 - 29886958
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29887230 |
ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggtgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtg |
29887131 |
T |
|
| Q |
120 |
taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa |
219 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||| | |||||| |||||| |
|
|
| T |
29887130 |
taagcaggattctccgttcctgcttcgcgcgctgcat-tgtgagataaaccggtggaatctcaggcgaaatcacaaatttcaccatcttcgttccgcgaa |
29887032 |
T |
|
| Q |
220 |
gaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag |
293 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29887031 |
gaacaccttcgacttgttgtttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag |
29886958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 13728805 - 13728701
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg |
119 |
Q |
| |
|
||||||||| || || || ||||| ||||||||||| |||| | |||| ||||| | |||||| ||||| || | ||||||||||||||||||||| ||| |
|
|
| T |
13728805 |
ccacgagtgacggagaagcacgaaacgcgaaagcagagaagacgaaatagttgataaaatccatgtgcaaaggagagaatcttgttcttcccattcggtg |
13728706 |
T |
|
| Q |
120 |
taagc |
124 |
Q |
| |
|
||||| |
|
|
| T |
13728705 |
taagc |
13728701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1284 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: scaffold1284
Description:
Target: scaffold1284; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 375 - 143
Alignment:
| Q |
20 |
ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttctt------cccat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
375 |
ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggtgcagagcaatgaatcttgttcttgttcttccaat |
276 |
T |
|
| Q |
114 |
tcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgttt |
213 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |
|
|
| T |
275 |
tcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttc |
176 |
T |
|
| Q |
214 |
cgcgaagaacaccttcgacttgttgcttccattg |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
175 |
cgcgaagaacaccttcga-ttgttgcttccattg |
143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 56288593 - 56288780
Alignment:
| Q |
66 |
atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagat |
165 |
Q |
| |
|
||||| || |||||||| || || |||| ||||||||||||||||||||| || || || || |||| |||||| || |||| || | || ||||||| |
|
|
| T |
56288593 |
atcgtggagagaatccatgtacacagcagagaatcttgttcttcccattcggtatacgccggattctccgttccggcggcgcgagcagcgtcggtgagat |
56288692 |
T |
|
| Q |
166 |
aaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta |
253 |
Q |
| |
|
| |||||||||||||| || |||| ||| ||||||| | ||||| |||| | ||| |||||||| ||||| |||||||||||||| |
|
|
| T |
56288693 |
acaccggtggaatctgcggcgaaacgacatgtttcaccatcttcgtaccgcgcaaaactccttcgacctgttgtttccattgaaggta |
56288780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0318 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 298
Target Start/End: Original strand, 19891 - 20093
Alignment:
| Q |
96 |
gaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaa |
195 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| || | | |||| |||||||| || ||| | ||||||||||||||||||| || || |||| || || |
|
|
| T |
19891 |
gaatcttgctcttcccattcagaatacgcagggttttccattccagcttcgcgagcgacatgtttgagataaaccggtggaatttgtggagaaaccataa |
19990 |
T |
|
| Q |
196 |
atttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagct |
295 |
Q |
| |
|
|||||||| |||| || | || | |||||||| ||||| |||||||||| |||||||| ||||| |||||| ||| ||||||| |||||||| | |
|
|
| T |
19991 |
atttcaccatttttcttcctcgcaacacaccttctacttgctgcttccattagaggtagtttgaatcatgaagcttcacaaaaactacctgtttgaaggt |
20090 |
T |
|
| Q |
296 |
ttt |
298 |
Q |
| |
|
||| |
|
|
| T |
20091 |
ttt |
20093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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