View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_101 (Length: 330)
Name: NF3918_low_101
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_101 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 11073865 - 11073555
Alignment:
| Q |
1 |
ttgaatttgttgcaacaaaactggaaagaaggtatatatgatataccatgatatatcccctaacctggttgaagctctatctcttcgttggtgtcttcaa |
100 |
Q |
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| T |
11073865 |
ttgaatttgttgcaacaaaactggaaagaaggtatatatgatataccatgatatatcccctaacctgtttgaagctctatctcttcgttggtgtcttcaa |
11073766 |
T |
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| Q |
101 |
tggatcctaacaacaaaccgagaggctaatttactcattgaatatgattcggatgtgacagtaaaatgcatcaaaggtcgtactcaagtcgccgaattag |
200 |
Q |
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| T |
11073765 |
tggatcctaacaacaaaccgagaggctaatttactcattgaatatgattcggatgtgacagtaaaatgcatcaaaggtcgtactcaagtcgccgaattag |
11073666 |
T |
|
| Q |
201 |
agaaagttattctagactgtactgatatcatttccactctttccaattgttatattaaaagaactaagaatgttgttgcccgttgtctagttggtatggc |
300 |
Q |
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| T |
11073665 |
agaaagttattcaagattgtactgatatcatttccactctttccaattgttatattaaaagaactaagaatgttgttgcccgttgtctagttggtatggc |
11073566 |
T |
|
| Q |
301 |
acaacagtttg |
311 |
Q |
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| T |
11073565 |
acaacagtttg |
11073555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 11150346 - 11150223
Alignment:
| Q |
59 |
cctaacctggttgaagctctatctcttcgttggtgtcttcaatggatcctaacaacaaaccgagaggctaatttactcattgaatatgattcggatgtga |
158 |
Q |
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| T |
11150346 |
cctaacctggctgaggctttagcgcttagatggtgtctccagtggatcctaacaacaaaccaagagggtaaattcatcattgaatcggactcagaagtaa |
11150247 |
T |
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| Q |
159 |
cagtaaaatgcatcaaaggtcgta |
182 |
Q |
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| T |
11150246 |
cagtgaactgcctcaaaggtcgta |
11150223 |
T |
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