View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_102 (Length: 329)
Name: NF3918_low_102
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_102 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 7500551 - 7500251
Alignment:
| Q |
11 |
cagagattacatagcattagaaaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagcta |
110 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500551 |
cagagattacatagcataacaaaaagattgaaggttgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagcta |
7500452 |
T |
|
| Q |
111 |
cattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaacaacttatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500451 |
cattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaacaacttatt |
7500352 |
T |
|
| Q |
211 |
attttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttcatagctac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500351 |
attttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttcatagctac |
7500252 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
|
| |
|
|
| T |
7500251 |
t |
7500251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 15171769 - 15171471
Alignment:
| Q |
11 |
cagagattacatagcattagaaaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagcta |
110 |
Q |
| |
|
||||||||||||||||| | |||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15171769 |
cagagattacatagcataacaaaa-gattgaggattgaaggtttttattgaaatacac--gagtgcctaacagtagttcttattctaatcaatacagcct |
15171673 |
T |
|
| Q |
111 |
cattagtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacat-agatagaaacatatgcataaaaaacaacttat |
209 |
Q |
| |
|
||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| | |||| | ||||||||||||||||||||| |||| ||||| |
|
|
| T |
15171672 |
catcagtgctaagcaaacttcctgaaacataaaccttcaacttctgtgccaaacaagcatgaaaccttagatagaaacatatgcataaataacagcttat |
15171573 |
T |
|
| Q |
210 |
tattttaatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttcatagcta |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
15171572 |
tattttaatacacaacatataagtagtgaaccctcttgaaagttaagacacaaatcacacactcctacgcatcttcagaactcttcttccatcaaagcta |
15171473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University