View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_106 (Length: 318)
Name: NF3918_low_106
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_106 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 8525123 - 8524833
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
8525123 |
gattgctgctcatgggatggtgtcacgtgtgacaccatcagtggtcacgtgattggcctcaaccttggctgtgaaggtcttcaaggcatactcaatccta |
8525024 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8525023 |
acagtacccttttccatcttgcttatattcaaaaactcaaccttgctaacaatgatttctctggctcttattttcattcaaagtttggtgggtttttgag |
8524924 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8524923 |
tctcacacatcttgacttgtctcatagttaccttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
8524833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 14554501 - 14554452
Alignment:
| Q |
36 |
atggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacctt |
85 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||||||||| ||||| |
|
|
| T |
14554501 |
atggtgtcacgtgcgacaccatatcaggtcacgtgattgaactagacctt |
14554452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 42125668 - 42125378
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || || |||||||||||||| |||||||||| | | |||||| |
|
|
| T |
42125668 |
gattgctgctcatggaatggtgtcacgtgtgataccatcactcgtcacgtgattggcctcaatcttggctgtgaaggccttcaaggtaaactacatccta |
42125569 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
|||||||||||||| |||||| | || |||||| ||||||||||||||||||| |||||| | ||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
42125568 |
acagtacccttttcaatcttgttcatcttcaaacactcaacctttctaacaatgatttctcttactctcattttcattctaagtttggtgggtttatgag |
42125469 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42125468 |
tcttgcacatcttgacttgtctcgtagtttctttaaaggtgaaattccaattcaaatctcacacctttccaaattacaatcacttcatctc |
42125378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 42130893 - 42130603
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||||||||||| || ||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
42130893 |
gattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaaccttggctgtgaaggccttacaggtacattcaatccta |
42130794 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
| ||||||||||| ||||||| | || | |||| ||||||||||||| ||||| |||||||||||||| ||||||||| |||||| |||| ||| ||| |
|
|
| T |
42130793 |
atagtaccctttttcatcttgttcatctccaaacactcaacctttcttacaatgatttctttgactctcattttcattataagttttgtggatttcagag |
42130694 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
310 |
Q |
| |
|
||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
42130693 |
tcttacacatcttgacttgtctgatagtaacttagaaggtgaaattccaactcaaatctctcacctatccaaattacaatcacttcatctc |
42130603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 41711721 - 41712011
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||| || ||||| |||| ||| || |||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
41711721 |
gattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatccta |
41711820 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
| | ||| ||||||||||||| | || | |||| ||||||||||||| ||||| |||||| | |||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
41711821 |
ataatactcttttccatcttgttcatctccaaacactcaacctttcttacaatgatttctcttactcccattttcattctaagtttggtcggtttttgag |
41711920 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
310 |
Q |
| |
|
||| ||||||||||| ||||| ||||| |||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
41711921 |
tcttgcacatcttgacatgtcttatagttactttgaaggtgaaattccaattcaaatctcacacctctccaaattacaatcacttcatctc |
41712011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 34230737 - 34231038
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | |||||||||| |||| || ||||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
34230737 |
gattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggctgtgaaggctttcaaggtatactccatccta |
34230836 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaatt------------atttctttgactcttattttcattcaaagtttgg |
207 |
Q |
| |
|
| ||||||||||||||||||||| | |||||| ||||||||||| ||||||| |||||| || ||| |||||||||| |||||||| |
|
|
| T |
34230837 |
atagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctctaacgatttctctggctcccattttcattctaagtttgg |
34230936 |
T |
|
| Q |
208 |
tgggtttttgagtctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcat |
307 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||| | |||||||| ||| ||||||||| |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
34230937 |
cgggtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcat |
34231036 |
T |
|
| Q |
308 |
ct |
309 |
Q |
| |
|
|| |
|
|
| T |
34231037 |
ct |
34231038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 34238792 - 34239081
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | |||||||||| |||| || |||||||| |||||||| ||||||||||| || |||||| |
|
|
| T |
34238792 |
gattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggttgtgaaggctttcaaggtatactccatccta |
34238891 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
| |||||||||||| || ||| | || | |||| ||||||||||||||||||| ||||| || || |||||| |||| |||||||| ||||| ||| |
|
|
| T |
34238892 |
atagtacccttttcaatattgttcatctccaaacactcaacctttctaacaatggtttctatggttcctattttgattctaagtttggcaggtttacgag |
34238991 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatct |
309 |
Q |
| |
|
||| |||||||||||||||||| || | || ||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
34238992 |
tcttacacatcttgacttgtctaatactcatgttggcggtgaaattccttctcaaatctcatacctttccaaattacaatcacttcatct |
34239081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 29 - 299
Target Start/End: Complemental strand, 42119058 - 42118787
Alignment:
| Q |
29 |
tcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatcctaacagtaccc |
128 |
Q |
| |
|
|||||| |||||||| |||||| || || ||||||||||||||| || |||||||||| | || | ||| |||| ||| ||||||||| ||||| |
|
|
| T |
42119058 |
tcatggcatggtgtcgcgtgtgtcagagtctctggtcacgtgattggtctcaaccttggcttttaacgccttactggtaaattacatcctaacaataccc |
42118959 |
T |
|
| Q |
129 |
ttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgagtctcacaca |
228 |
Q |
| |
|
|||||||||||| | || | |||| ||| |||||| | |||| |||||| | ||| ||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
42118958 |
ttttccatcttgttcatctccaaacactaaaccttgcatccaataatttctccgcttctcgttttcattctaagtttggtggttttttgagtcttacaca |
42118859 |
T |
|
| Q |
229 |
tcttgacttgtctcgtag-tttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaat |
299 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
42118858 |
tcttgacttgtctcatagttttctttaaaggtgaaattccaactcaaatctcacacttatccaaattacaat |
42118787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 41569960 - 41570172
Alignment:
| Q |
29 |
tcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatcctaacagtaccc |
128 |
Q |
| |
|
|||||| ||||||||||||| ||| | || |||||| |||||||| || |||||||||||||| | |||||||||| | | ||||||||| || | |
|
|
| T |
41569960 |
tcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgtgaatgccttcaaggtaaaatttatcctaacaacactc |
41570059 |
T |
|
| Q |
129 |
ttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgagtctcacaca |
228 |
Q |
| |
|
|||| ||||||||| || | ||| ||||||||||||| ||||| ||||||| |||| |||| ||||| |||||||||| ||| |||||| ||||| |
|
|
| T |
41570060 |
tttttcatcttgctcatctccaatcactcaacctttctcacaatgatttcttcaactccaatttgcattctcagtttggtggatttaagagtcttacaca |
41570159 |
T |
|
| Q |
229 |
tcttgacttgtct |
241 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41570160 |
tcttgacttgtct |
41570172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 25520957 - 25521246
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||| ||||| |||||||| || ||||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
25520957 |
gattgctgctcatggcatggtgtcacatgcgacaccacttttggtcgcgtgattggcctcaaccttggctgtgaaggcctccaaggtatattccatccta |
25521056 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||| |||||||| | ||||||||||||||| ||| |
|
|
| T |
25521057 |
atagtactcttttccatcttgctcatattcaaaaactcaacctttcttacaatgatttcactggctcccattttcatgctaagtttggtgggtttcagag |
25521156 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatct |
309 |
Q |
| |
|
||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25521157 |
tcttacacatctttacttgtctggtagtttctttaaaggtaaaattccaactcaaatctcacacctttccaaattacaatcacttcatct |
25521246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 12250489 - 12250199
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||| |||||| ||||||| || |||||||| |||||| ||| | |||||||| | |||| |
|
|
| T |
12250489 |
gattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggcctcgaccttggcgatgaaggccttgatggtatattacaaccta |
12250390 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
| |||||||||||| |||||||| || | |||| ||||||||||||| |||| |||||| |||| |||||||||| ||||||||||| || || | |
|
|
| T |
12250389 |
atagtacccttttcgatcttgctcatctccaaacactcaacctttcttccaatgatttctcaaactcccattttcattctaagtttggtggattctttaa |
12250290 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
310 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
12250289 |
tcttacacatcttgacttgtctaatagtttctttaaaggtgaagttccaactcaaatctcacacctttccaaattagaatcacttcatctc |
12250199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 11120442 - 11120152
Alignment:
| Q |
20 |
gattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaaggtatattcaatccta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| || || ||||||||||||||||||||||| ||||| |||| | |
|
|
| T |
11120442 |
gattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaaggtcttcaaggcatattacatccga |
11120343 |
T |
|
| Q |
120 |
acagtacccttttccatcttgcttatattcaaaaactcaacctttctaacaattatttctttgactcttattttcattcaaagtttggtgggtttttgag |
219 |
Q |
| |
|
| ||||||||||||||||||| | || | |||| |||||||||| ||||| |||||| | |||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
11120342 |
atagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcgttttcattctaagtttggtgggtttcagag |
11120243 |
T |
|
| Q |
220 |
tctcacacatcttgacttgtctcgtagtttctttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc |
310 |
Q |
| |
|
||| ||||||||| |||||||| |||| | || | |||||||||||||||||||||||| | |||| |||||||||||| ||| ||||| |
|
|
| T |
11120242 |
tcttacacatctttacttgtcttatagtaacatttatggtgaaattccaactcaaatctcatatctttccaaattacaatccctttatctc |
11120152 |
T |
|
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