View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_114 (Length: 306)

Name: NF3918_low_114
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_114
NF3918_low_114
[»] chr3 (5 HSPs)
chr3 (17-216)||(43597857-43598059)
chr3 (212-296)||(43597747-43597835)
chr3 (36-110)||(33068264-33068338)
chr3 (34-110)||(27786528-27786604)
chr3 (74-110)||(8380471-8380507)
[»] chr5 (3 HSPs)
chr5 (55-105)||(7135329-7135379)
chr5 (49-104)||(39231871-39231926)
chr5 (49-110)||(38244157-38244218)
[»] chr2 (4 HSPs)
chr2 (36-110)||(34360838-34360912)
chr2 (36-103)||(36446985-36447052)
chr2 (36-104)||(33853824-33853892)
chr2 (53-109)||(34138768-34138824)
[»] chr1 (4 HSPs)
chr1 (55-97)||(5091755-5091797)
chr1 (53-112)||(42074203-42074262)
chr1 (53-107)||(11016664-11016718)
chr1 (63-109)||(46673860-46673906)
[»] chr4 (6 HSPs)
chr4 (53-110)||(25129762-25129818)
chr4 (49-110)||(32125410-32125471)
chr4 (49-110)||(47493208-47493269)
chr4 (49-91)||(51333452-51333494)
chr4 (49-102)||(33004250-33004303)
chr4 (74-110)||(25233615-25233651)
[»] chr8 (4 HSPs)
chr8 (51-110)||(108202-108261)
chr8 (53-106)||(11334255-11334308)
chr8 (53-106)||(30857305-30857358)
chr8 (35-91)||(4079554-4079610)
[»] chr7 (3 HSPs)
chr7 (32-98)||(16970312-16970378)
chr7 (49-110)||(42926992-42927053)
chr7 (51-104)||(47877881-47877934)
[»] chr6 (2 HSPs)
chr6 (36-110)||(7055630-7055704)
chr6 (53-103)||(26478521-26478571)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 43598059 - 43597857
Alignment:
Q  17 attttcttgtcaaatacacatactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctattaagtt 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  43598059 attttcttgtcaaatacacatacttcatctgctcatatttataaacaaaaaactactttttaagtttattgaatacctaatatatttgatctattaagtt 43597960  T
Q  117 caatagctgcatttttgtgtaataacctcgca---aagatcgataatctaacacacttacatgaatattagtggcatgtgaaactttgtcatgtcattaa 213  Q
    |||||||||||||||||||||| |||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43597959 caatagctgcatttttgtgtaagaacctctcaaagaagatcgataatctaacacacttacatgaatattagtggcatgtgaaactttgtcatgtcattaa 43597860  T
Q  214 caa 216  Q
    |||    
T  43597859 caa 43597857  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 43597835 - 43597747
Alignment:
Q  212 aacaacacatataaggatgaccttctaaggtatttgctaattcatgattgt----gagtatcacaccgaacatgaactatccattctct 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||    
T  43597835 aacaacacatataaggatgaccttctaaggtatttgctaattcatgattgtgagtgagtatcacactgaacatgaactatccattctct 43597747  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 33068338 - 33068264
Alignment:
Q  36 atactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    |||||||||| | |||||||||||||||||||| ||  |||||  || ||||||||| ||||||||||| |||||    
T  33068338 atactccatccgatcatatttataaacaaaaaattattttttacattcattgaatatttaatatatttggtctat 33068264  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 27786604 - 27786528
Alignment:
Q  34 acatactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    ||||||||| || | ||| |||||||| ||||| || || ||||||||| |||||||| |||||||||||| |||||    
T  27786604 acatactccctccgatcacatttataagcaaaacacaactttttaggttcattgaatacctaatatatttggtctat 27786528  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 8380471 - 8380507
Alignment:
Q  74 ttttaggtttattgaatatctaatatatttgatctat 110  Q
    ||||||||||||||||||  |||||||||||||||||    
T  8380471 ttttaggtttattgaataattaatatatttgatctat 8380507  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 7135379 - 7135329
Alignment:
Q  55 ttataaacaaaaaactaccttttaggtttattgaatatctaatatatttga 105  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  7135379 ttataaacaaaaaactacgttttagatttattgaataactaatatatttga 7135329  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 39231926 - 39231871
Alignment:
Q  49 tcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttg 104  Q
    |||||||||||||||||||||||  ||||||||| ||| |||||| ||| ||||||    
T  39231926 tcatatttataaacaaaaaactattttttaggttcatttaatatcaaatgtatttg 39231871  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 38244218 - 38244157
Alignment:
Q  49 tcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    |||||||||||||||||| | | | |||||| || |||||| ||||||| ||||||||||||    
T  38244218 tcatatttataaacaaaagagtgctttttagattcattgaacatctaatgtatttgatctat 38244157  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 34360912 - 34360838
Alignment:
Q  36 atactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    |||||||||||| ||||||||||||  |||||  ||| ||||||||| |||||||||  ||| ||||||||||||    
T  34360912 atactccatctgatcatatttataagtaaaaatgtactttttaggttcattgaatatacaatgtatttgatctat 34360838  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 36446985 - 36447052
Alignment:
Q  36 atactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatattt 103  Q
    ||||| |||||| |||||||||||| |||||| | || |||||  |||||| ||||||||||||||||    
T  36446985 atacttcatctgatcatatttataagcaaaaatcaactttttaaatttattaaatatctaatatattt 36447052  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 33853824 - 33853892
Alignment:
Q  36 atactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttg 104  Q
    ||||| |||| | |||||||||||||||||||  ||| ||||||||| ||||||||  |||| ||||||    
T  33853824 atacttcatccggtcatatttataaacaaaaatgtactttttaggttcattgaatacataatgtatttg 33853892  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 34138824 - 34138768
Alignment:
Q  53 atttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatcta 109  Q
    ||||||||||||||||| |  ||||||||||||||||||  | |||||||| |||||    
T  34138824 atttataaacaaaaaacaattttttaggtttattgaataattgatatatttcatcta 34138768  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 5091797 - 5091755
Alignment:
Q  55 ttataaacaaaaaactaccttttaggtttattgaatatctaat 97  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  5091797 ttataaacaaaaaactaccttttaggttcattgaataactaat 5091755  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 42074262 - 42074203
Alignment:
Q  53 atttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctatta 112  Q
    |||||||| ||||||||||  ||||||||| |||||||  |||||||||||| |||||||    
T  42074262 atttataagcaaaaaactattttttaggttcattgaatgcctaatatatttggtctatta 42074203  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 11016718 - 11016664
Alignment:
Q  53 atttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatc 107  Q
    ||||||||||||||| | || |||||||||||||||||| ||||| ||| |||||    
T  11016718 atttataaacaaaaatcaactttttaggtttattgaataactaatgtatatgatc 11016664  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 46673860 - 46673906
Alignment:
Q  63 aaaaaactaccttttaggtttattgaatatctaatatatttgatcta 109  Q
    |||||||||| |||||| || ||||||||||||||||||||| ||||    
T  46673860 aaaaaactactttttagattcattgaatatctaatatatttggtcta 46673906  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 25129818 - 25129762
Alignment:
Q  53 atttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    |||||||| |||||||| |  |||||| ||||||||||||||||||||||||||||||    
T  25129818 atttataatcaaaaaacaaa-ttttagatttattgaatatctaatatatttgatctat 25129762  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 32125471 - 32125410
Alignment:
Q  49 tcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    |||||||||||| |||||| |||| ||||||||| |||||||||||||| ||| || |||||    
T  32125471 tcatatttataagcaaaaatctactttttaggttcattgaatatctaatgtatgtggtctat 32125410  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 47493208 - 47493269
Alignment:
Q  49 tcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    ||||||||||||  |||||||||| |||||| ||||||||||| ||||| |||||| |||||    
T  47493208 tcatatttataagtaaaaaactactttttagatttattgaatacctaatgtatttggtctat 47493269  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 51333452 - 51333494
Alignment:
Q  49 tcatatttataaacaaaaaactaccttttaggtttattgaata 91  Q
    |||||||||||||||||||||||| |||||  |||||||||||    
T  51333452 tcatatttataaacaaaaaactactttttaaatttattgaata 51333494  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 33004303 - 33004250
Alignment:
Q  49 tcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatt 102  Q
    ||||||||||||  ||||||| || ||||| |||||||||||||||||| ||||    
T  33004303 tcatatttataagaaaaaaacaacattttaagtttattgaatatctaatgtatt 33004250  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 25233615 - 25233651
Alignment:
Q  74 ttttaggtttattgaatatctaatatatttgatctat 110  Q
    |||||| |||||||||||||||||||||||| |||||    
T  25233615 ttttagatttattgaatatctaatatatttggtctat 25233651  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 108202 - 108261
Alignment:
Q  51 atatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    ||||||||||| |||||| ||| ||||||||| ||||||||| | ||||||||| |||||    
T  108202 atatttataaataaaaaattactttttaggttcattgaatatatgatatatttggtctat 108261  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 11334255 - 11334308
Alignment:
Q  53 atttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgat 106  Q
    ||||||||| ||||||||   |||||| |||||||||||| |||||||||||||    
T  11334255 atttataaataaaaaactcttttttagatttattgaatatttaatatatttgat 11334308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 30857358 - 30857305
Alignment:
Q  53 atttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgat 106  Q
    |||||||| ||||||| ||| |||||| ||||||||||  ||||||||||||||    
T  30857358 atttataagcaaaaaattactttttagatttattgaatgcctaatatatttgat 30857305  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 4079610 - 4079554
Alignment:
Q  35 catactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaata 91  Q
    |||||| |||| | ||||||||||||||||||||| |  ||||||||| ||||||||    
T  4079610 catacttcatccggtcatatttataaacaaaaaacaattttttaggttcattgaata 4079554  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 16970378 - 16970312
Alignment:
Q  32 acacatactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaata 98  Q
    |||||||||  ||| | |||||||||||||| ||||||||| ||||| ||| |||||||| ||||||    
T  16970378 acacatacttaatccgatcatatttataaactaaaaactactttttaagttcattgaataactaata 16970312  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 42926992 - 42927053
Alignment:
Q  49 tcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    ||||||||||||||||||| | || | |||| || |||||||| ||||| ||||||||||||    
T  42926992 tcatatttataaacaaaaatcaacttcttagattcattgaataactaatgtatttgatctat 42927053  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 47877881 - 47877934
Alignment:
Q  51 atatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttg 104  Q
    |||||||||||||||||  ||| ||||| ||||||||||||  |||||||||||    
T  47877881 atatttataaacaaaaatgtactttttaagtttattgaatacataatatatttg 47877934  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 7055704 - 7055630
Alignment:
Q  36 atactccatctgctcatatttataaacaaaaaactaccttttaggtttattgaatatctaatatatttgatctat 110  Q
    ||||||| || | ||| |||||||| ||||||  ||| ||||||||| ||||||||  |||||||||||||||||    
T  7055704 atactccctccgatcacatttataagcaaaaatgtactttttaggttcattgaatacataatatatttgatctat 7055630  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 26478571 - 26478521
Alignment:
Q  53 atttataaacaaaaaactaccttttaggtttattgaatatctaatatattt 103  Q
    |||||||| ||||| ||||| |||||||||||||||||| ||||| |||||    
T  26478571 atttataagcaaaacactactttttaggtttattgaatacctaatgtattt 26478521  T

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