View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_115 (Length: 306)

Name: NF3918_low_115
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_115
NF3918_low_115
[»] scaffold0141 (1 HSPs)
scaffold0141 (13-274)||(16378-16639)
[»] chr7 (6 HSPs)
chr7 (13-274)||(8425011-8425272)
chr7 (48-119)||(49094545-49094616)
chr7 (48-116)||(38836138-38836206)
chr7 (48-119)||(8308210-8308281)
chr7 (44-119)||(30559362-30559437)
chr7 (53-115)||(25862613-25862675)
[»] chr5 (5 HSPs)
chr5 (13-273)||(11888026-11888286)
chr5 (56-115)||(31610042-31610101)
chr5 (48-119)||(33417430-33417501)
chr5 (13-120)||(18979824-18979931)
chr5 (53-115)||(27584700-27584762)
[»] chr1 (6 HSPs)
chr1 (13-273)||(52242730-52242994)
chr1 (13-120)||(43403893-43404000)
chr1 (53-115)||(42080695-42080757)
chr1 (56-107)||(18438600-18438651)
chr1 (56-107)||(18449458-18449509)
chr1 (56-107)||(18454551-18454602)
[»] scaffold0267 (1 HSPs)
scaffold0267 (13-274)||(7292-7547)
[»] chr3 (3 HSPs)
chr3 (13-274)||(3792350-3792605)
chr3 (13-224)||(3830579-3830785)
chr3 (48-116)||(11536250-11536318)
[»] chr2 (10 HSPs)
chr2 (13-245)||(13698095-13698322)
chr2 (13-120)||(40275098-40275206)
chr2 (56-115)||(9446973-9447032)
chr2 (44-115)||(14555881-14555952)
chr2 (56-119)||(21949897-21949960)
chr2 (56-115)||(31320254-31320313)
chr2 (53-115)||(30426133-30426195)
chr2 (53-115)||(32229984-32230046)
chr2 (23-119)||(38346694-38346790)
chr2 (71-119)||(41411522-41411570)
[»] chr4 (6 HSPs)
chr4 (122-274)||(48229494-48229647)
chr4 (144-249)||(7362005-7362110)
chr4 (13-120)||(3958944-3959051)
chr4 (13-115)||(39735777-39735879)
chr4 (48-116)||(2048983-2049051)
chr4 (53-115)||(16595098-16595160)
[»] scaffold0060 (1 HSPs)
scaffold0060 (13-120)||(18886-18992)
[»] chr8 (5 HSPs)
chr8 (13-120)||(19168141-19168248)
chr8 (13-120)||(26155239-26155346)
chr8 (55-119)||(6596522-6596586)
chr8 (53-116)||(40715950-40716013)
chr8 (55-115)||(4922779-4922839)
[»] chr6 (2 HSPs)
chr6 (55-119)||(6982840-6982904)
chr6 (53-115)||(10501975-10502037)


Alignment Details
Target: scaffold0141 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 16639 - 16378
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||| |||||||||||||||||||||||||||    
T  16639 gaaacatgccaataagctaaatgatacaatggttcaaaatacaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaa 16540  T
Q  113 tatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaat 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  16539 tatttgtagaagtacatccaaagcttataaaagtttttgttataggctagaattctaatatgcttctgtttgttttgccttagtttggctttggtgtaat 16440  T
Q  213 actcatgtgtacatgggttcaggtcccaaaatcctgattttgtaatatttttgtgccttatc 274  Q
    |||| |||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||    
T  16439 actcttgtgtacatgggttcaagtcccaaaatcctgactttttagtatttttgtgccttatc 16378  T

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Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 8425011 - 8425272
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  8425011 gaaacatgccaataagctaaatgatacaatggttcaaagtataaggagtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatccaaaa 8425110  T
Q  113 tatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaat 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  8425111 tatttgtagaagtacatccaaagcttataaaagtttttgttataggctagaattctaatatgcttctgtttgttttgccttagtttggctttggtgtaat 8425210  T
Q  213 actcatgtgtacatgggttcaggtcccaaaatcctgattttgtaatatttttgtgccttatc 274  Q
    |||| || ||| ||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  8425211 actcttgcgtaaatgggttcaggtcccaaaatcctgactttttagtatttttgtgccttatc 8425272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 49094616 - 49094545
Alignment:
Q  48 aaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    |||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||    
T  49094616 aaagcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgt 49094545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 38836138 - 38836206
Alignment:
Q  48 aaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatt 116  Q
    |||| |||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| |||||||    
T  38836138 aaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatatt 38836206  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 8308281 - 8308210
Alignment:
Q  48 aaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    |||||||||||||||||||||||||||| ||||| || |||  ||| |||||||| ||||| ||||||||||    
T  8308281 aaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgt 8308210  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 30559437 - 30559362
Alignment:
Q  44 gttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    |||||||| |||||| ||||||||||| ||||  ||||||| |||||||| |||||||||||||| ||| ||||||    
T  30559437 gttcaaagcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgt 30559362  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 25862675 - 25862613
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||||    
T  25862675 acaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatat 25862613  T

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Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 11888286 - 11888026
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||| |||||||||||||||||||||| ||||    
T  11888286 gaaacatgccaataagctaaatgatacaatggttcaaagtactagtagtgagcatatacaaattcgttccaagaagggtgtgatcaaaagcaatctaaaa 11888187  T
Q  113 tatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaat 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  11888186 tatttgtagaagtacatccgaagcttataaaagtttctgttataggctagaattctaatatgcttatgtttgttttgccttagtttggctttggtgtaat 11888087  T
Q  213 actcatgtgtacatgggttcaggtcccaaaatcctgattttgtaatatttttgtgccttat 273  Q
    |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  11888086 actcttgtgtacatgggttcaggtcccaaaatcctgattttttagtatttttgtgccttat 11888026  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 31610042 - 31610101
Alignment:
Q  56 agtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatat 31610101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 33417430 - 33417501
Alignment:
Q  48 aaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    |||| ||||||||||||||||||||||  ||||| || |||||||| |||||||| ||||| ||||||||||    
T  33417430 aaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgt 33417501  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 18979824 - 18979931
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||| |||||||||||| |||||||| |  ||||||||  | |   ||||| ||||||||||| ||||| || |||||||| ||||||| |||||| |||    
T  18979824 gaaatatgtcaataagccaaatgatataggggttcaaaacatattaagtgatcacatacaaactcgttctaaaaagggtgtcatcaaaaccaatcccaaa 18979923  T
Q  113 tatttgta 120  Q
    ||| ||||    
T  18979924 tatctgta 18979931  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 27584700 - 27584762
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||||||||||| ||||| |||||||| |||||||| || |||  |||||| ||||||    
T  27584700 acaagtagtgagcacatccaaactcgttccaaaaagggtgttataaaacacaatcctaaatat 27584762  T

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Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 52242994 - 52242730
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacata----caaacacgttccaataagggtgtgatcaaaagcaatcc 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||| |||||||||||||||||||||||    
T  52242994 gaaacatgtcaataggctaaatgatacaatggttcaaagtacaagtagtgagcacatatatacaaactcgttccaagaagggtgtgatcaaaagcaatcc 52242895  T
Q  109 aaaatatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctg 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  52242894 aaaatatttgtagaagtacatccaaaacttataaaagtttctgttatagactagaattctaatatgcttctgtttgttttgccttagtttggctttggtg 52242795  T
Q  209 taatactcatgtgtacatgggttcaggtcccaaaatcctgattttgtaatatttttgtgccttat 273  Q
    | |||||| |||||||||||||||||||||||||||||| | ||| || ||||| |||| |||||    
T  52242794 tcatactcttgtgtacatgggttcaggtcccaaaatcctaactttttagtatttctgtgtcttat 52242730  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 43404000 - 43403893
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||||||||||||||||||  |||||||   |||  |||||| || |||||||| ||||| || |||||||| |||||||||||||| |||    
T  43404000 gaaacatgccaataagctaaatgatacaggggttcaacacacatttagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaa 43403901  T
Q  113 tatttgta 120  Q
    ||||||||    
T  43403900 tatttgta 43403893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 42080757 - 42080695
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||    
T  42080757 acaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatat 42080695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 18438600 - 18438651
Alignment:
Q  56 agtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  18438600 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 18438651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 18449458 - 18449509
Alignment:
Q  56 agtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  18449458 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 18449509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 18454551 - 18454602
Alignment:
Q  56 agtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  18454551 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 18454602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 7547 - 7292
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||| |||||| |||||||||||| ||||| ||||||||| || |||| ||||| |||||||  ||| |||||||||||||||||||||||    
T  7547 gaaacatgccaattagctaattgatacaatggtccaaagcacaagtagtaagtacattcaaactcgttccatgaagagtgtgatcaaaagcaatccaaaa 7448  T
Q  113 tatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaat 212  Q
    ||||||||||| |    |||||  ||  ||  |||  ||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||| ||||||    
T  7447 tatttgtagaatt----ccaaaaattg-aattgttgttgttataggctagaattcttatatgcttttgtttgttttgctttagtttggctttggtgtaat 7353  T
Q  213 actcatgtgtacatgggttcaggtcccaaaatcctgattttgtaatatttttgtgccttatc 274  Q
      || |||||||||||||||||| ||||||||||||| ||| || | |||||||||||||||    
T  7352 gatcttgtgtacatgggttcaggccccaaaatcctgacttt-tagtgtttttgtgccttatc 7292  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 3792605 - 3792350
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||| |||||| |||||||||| |  |||| | ||||||||||||||| ||||| |||||||  || ||||||||||||||||||||||||    
T  3792605 gaaacatgccaattagctaattgatacaatgatcaaaagcataagtagtgagcacattcaaactcgttccatgaaaggtgtgatcaaaagcaatccaaaa 3792506  T
Q  113 tatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaat 212  Q
    ||||||||||| |    |||||  ||  ||  ||| |||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||| ||||||    
T  3792505 tatttgtagaatt----ccaaaaattg-aattgttgctgttataggctagaattctgatatgcttatgtttgttttgctttagtttggctttggtgtaat 3792411  T
Q  213 actcatgtgtacatgggttcaggtcccaaaatcctgattttgtaatatttttgtgccttatc 274  Q
     ||| |||||||||||||||||  | ||||||| ||| ||| || | |||||||||||||||    
T  3792410 gctcttgtgtacatgggttcagaccgcaaaatcttgacttt-tagtgtttttgtgccttatc 3792350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 3830785 - 3830579
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||| |||||| |||||||||||| ||||| ||||||||||||||||| ||||| |||||||  ||| |||||||||||||||||||||||    
T  3830785 gaaacatgccaattagctaattgatacaatggtccaaagcacaagtagtgagcacattcaaactcgttccatgaagagtgtgatcaaaagcaatccaaaa 3830686  T
Q  113 tatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaat 212  Q
    |||||||||||     ||||||  ||  ||  ||| |||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||| ||||||    
T  3830685 tatttgtagaa----ttccaaaaatt-gaattgttgctgttataggctagaattcttatatgcttttgtttgttttgctttagtttggctttggtgtaat 3830591  T
Q  213 actcatgtgtac 224  Q
     ||| |||||||    
T  3830590 gctcttgtgtac 3830579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 11536250 - 11536318
Alignment:
Q  48 aaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatt 116  Q
    |||| ||||||||||||||||||||||| ||||  || |||||||| || |||| |||||  |||||||    
T  11536250 aaagcacaagtagtgagcacatacaaactcgtttaaaaaagggtgtaataaaaaacaatcacaaatatt 11536318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 13698095 - 13698322
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||  ||||||  |||||||||||||||||||||||||||    
T  13698095 gaaacatgccaataagctaattgatacaatggtccaaagcacaagtagtgagcacattcaaactggttccatgaagggtgtgatcaaaagcaatccaaaa 13698194  T
Q  113 tatttgtagaagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaat 212  Q
    |||||||||||     ||||||  ||  ||  | | || ||||||||||||||| | |||| ||| |||||||||||| |||||||| ||||| |||||     
T  13698195 tatttgtagaa----ttccaaaaatt-gaattgatgctcttataggctagaattttgatatgcttttgtttgttttgctttagtttgtctttggtgtaac 13698289  T
Q  213 actcatgtgtacatgggttcaggtcccaaaatc 245  Q
    |||| ||||||||||| |||||  |||||||||    
T  13698290 actcttgtgtacatggattcagaccccaaaatc 13698322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 40275098 - 40275206
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaa-agtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaa 111  Q
    |||||||| |||||||||||||||||||  ||||||| |  |||  |||||| || |||||||| ||||| || |||||||| |||||||||||||| ||    
T  40275098 gaaacatgccaataagctaaatgatacaggggttcaacaacacatttagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaa 40275197  T
Q  112 atatttgta 120  Q
    |||||||||    
T  40275198 atatttgta 40275206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 9446973 - 9447032
Alignment:
Q  56 agtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 9447032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 14555881 - 14555952
Alignment:
Q  44 gttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    |||||||| ||||| ||||| || |||||||| |||||||| ||||||||||||||||||||||| ||||||    
T  14555881 gttcaaagcacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 14555952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 21949960 - 21949897
Alignment:
Q  56 agtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    |||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgt 21949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 31320254 - 31320313
Alignment:
Q  56 agtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    |||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||    
T  31320254 agtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 31320313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 30426195 - 30426133
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||||||||||| ||||| |||||||| |||||||| || |||| |||||||||||||    
T  30426195 acaagtagtgagcacatccaaactcgttccaaaaagggtgtaataaaaaacaatccaaaatat 30426133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 32230046 - 32229984
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||||||||||| ||||| |||||||| |||||||| || |||| |||||||||||||    
T  32230046 acaagtagtgagcacatccaaactcgttccaaaaagggtgtaataaaaaacaatccaaaatat 32229984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 38346790 - 38346694
Alignment:
Q  23 aataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    |||||||||||||||| |  ||||| ||| |||||||||||||| ||||| || |||||  | |||| |||| | |||| |||||| ||||||||||    
T  38346790 aataagctaaatgataaaggggttccaagcacaagtagtgagcagatacatactcgttcacaaaaggatgtggtaaaaaacaatcctaaatatttgt 38346694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 41411570 - 41411522
Alignment:
Q  71 caaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    ||||| |||||||| |||||||| |||||||||||||| ||||||||||    
T  41411570 caaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgt 41411522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 274
Target Start/End: Original strand, 48229494 - 48229647
Alignment:
Q  122 aagtacatccaaagcttataaaagtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaatactcatgtg 221  Q
    ||||| ||||||||||| | | |||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | |||||| ||| ||||    
T  48229494 aagtatatccaaagcttttgatagttactgttataggctagaattctaatttgcttctgcttgttttgccttagtttggcttcggtgtaattctcttgtg 48229593  T
Q  222 tacatgggttcaggtcccaaaatcctgattttgtaat-atttttgtgccttatc 274  Q
    |||||||||| ||||||||||||||||| ||| || |  |||||||||||||||    
T  48229594 tacatgggtttaggtcccaaaatcctgactttttagtgttttttgtgccttatc 48229647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 7362110 - 7362005
Alignment:
Q  144 agtttctgttataggctagaattctaatatacttctgtttgttttgccttagtttggctttgctgtaatactcatgtgtacatgggttcaggtcccaaaa 243  Q
    |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||    
T  7362110 agttgctgttgtaggctagaattctaatatgcttatgtttgttttgccttagtttggcttcggtgtaattctcttgtgtacatgggttcaggtcccaaaa 7362011  T
Q  244 tcctga 249  Q
    ||||||    
T  7362010 tcctga 7362005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 3959051 - 3958944
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||||||||||||||||||  ||||||||| |||| |||||||||||||||||| ||||| || |||||||| |||||||||||||| |||    
T  3959051 gaaacatgccaataagctaaatgatacaggggttcaaagcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaa 3958952  T
Q  113 tatttgta 120  Q
    ||||||||    
T  3958951 tatttgta 3958944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 39735777 - 39735879
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    ||||||||  |||||||||||||||||| |||| ||| | ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  39735777 gaaacatgctaataagctaaatgatacagtggtccaaggcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaa 39735876  T
Q  113 tat 115  Q
    |||    
T  39735877 tat 39735879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 2048983 - 2049051
Alignment:
Q  48 aaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatt 116  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||    
T  2048983 aaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatatt 2049051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 16595160 - 16595098
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    |||||||||||| |||| ||||| |||| ||| |||||||| || ||||||||||| ||||||    
T  16595160 acaagtagtgagtacatccaaactcgtttcaaaaagggtgttataaaaagcaatcccaaatat 16595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 18886 - 18992
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||||||||||||||||||   |||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||||| |||    
T  18886 gaaacatgccaataagctaaatgatacaggagttcaaagcacaattattgagcacatacaaactcgttctaa-aagggtgtcatcaaaagcaatcccaaa 18984  T
Q  113 tatttgta 120  Q
    ||||||||    
T  18985 tatttgta 18992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 19168141 - 19168248
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||| |||||||||||||||||||   |||||||| |||| || ||||||||||||||| ||||| || |||||||| |||||||||||| | |||    
T  19168141 gaaacatgccaataagctaaatgatacaggagttcaaagcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaa 19168240  T
Q  113 tatttgta 120  Q
     |||||||    
T  19168241 aatttgta 19168248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 26155239 - 26155346
Alignment:
Q  13 gaaacatgtcaataagctaaatgatacaatggttcaaagtacaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaa 112  Q
    |||||||  |||||||||||||||||||  |||||||   |||  |||||| ||||||||||| ||||| || ||| | || |||||||||||||| |||    
T  26155239 gaaacatcccaataagctaaatgatacaggggttcaacacacatttagtgaacacatacaaactcgttctaaaaagtgcgtcatcaaaagcaatcccaaa 26155338  T
Q  113 tatttgta 120  Q
    ||||||||    
T  26155339 tatttgta 26155346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 6596522 - 6596586
Alignment:
Q  55 aagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    ||||||||||||||| ||||| | ||| || |||||||| |||||||||||||| ||||||||||    
T  6596522 aagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgt 6596586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 40715950 - 40716013
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatt 116  Q
    ||||||||||||||||||||||| |||| ||| || | ||  |||||||||||||| |||||||    
T  40715950 acaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaatatt 40716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 4922779 - 4922839
Alignment:
Q  55 aagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||||||||| ||||| |||||||| |||||| | || ||||||| ||| ||||||    
T  4922779 aagtagtgagcacattcaaactcgttccaaaaagggtctcataaaaagcattcccaaatat 4922839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 6982840 - 6982904
Alignment:
Q  55 aagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatatttgt 119  Q
    ||||||||||||||||||||| ||||| || |||||||| |||||||||||||  ||||||||||    
T  6982840 aagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgt 6982904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 10502037 - 10501975
Alignment:
Q  53 acaagtagtgagcacatacaaacacgttccaataagggtgtgatcaaaagcaatccaaaatat 115  Q
    ||||||||| ||||||| ||||| |||||||| |||||||| || ||||||||||| ||||||    
T  10502037 acaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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