View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_118 (Length: 303)
Name: NF3918_low_118
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_118 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 21708119 - 21707902
Alignment:
| Q |
13 |
aatatttgtttgttaaagcaacattaattgaatagagaagatgtgtaacggtcatatnnnnnnnntcaaataaaattcatgcaacatttgttcttatgat |
112 |
Q |
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| T |
21708119 |
aatatttgtttgttaaagcaacattaattgaatagagaagatgtgtaacggtcatataaaaaaaatcaaataaaattcatgcaacatttgttcttatgat |
21708020 |
T |
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| Q |
113 |
attaaattcatgaagaattcactatattatatcggatatttacaatgtacgttccttcacttaaagtagcttctataaattgttatttgatattctcaca |
212 |
Q |
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| T |
21708019 |
attaaattcatgaagaattcactatattatatcggatatttacaatgcacgttccttcacttaaagtagcttctattaattgttatttgacattctcaca |
21707920 |
T |
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| Q |
213 |
taagagtttctacttatt |
230 |
Q |
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|||| ||||||||||||| |
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| T |
21707919 |
taagtgtttctacttatt |
21707902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 21707114 - 21707071
Alignment:
| Q |
244 |
gtcttttacatagtttcacattaacatatatatgtgcaagttac |
287 |
Q |
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| T |
21707114 |
gtcttttacatagtttcacattaacatatatatgtgcaagttac |
21707071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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