View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_120 (Length: 299)
Name: NF3918_low_120
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_120 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 161 - 295
Target Start/End: Original strand, 23045831 - 23045965
Alignment:
| Q |
161 |
tgattattctaatttaagaatttttgaatatcctgcatatgtacatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttat |
260 |
Q |
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| T |
23045831 |
tgattattctaatttaagaatttttggatgtcctgcatatgcacatgtcaatgatggcaaattagctccaagagctgttgagtgcatatttcttggttat |
23045930 |
T |
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| Q |
261 |
gcatctgagtctaaggggtatcgtctgtgctgctc |
295 |
Q |
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| T |
23045931 |
gcatctgagtctaaggggtatcgtttgtggtgctc |
23045965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 29473133 - 29473265
Alignment:
| Q |
163 |
attattctaatttaagaatttttgaatatcctgcatatgtacatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttatgc |
262 |
Q |
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|||||||||||||||||||||||| || || | |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
29473133 |
attattctaatttaagaatttttggatgtcttacatatgcacatgtcaatgatggcaaattagctccaagagctgttgagtgcatatttcttggttatgc |
29473232 |
T |
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| Q |
263 |
atctgagtctaaggggtatcgtctgtgctgctc |
295 |
Q |
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| T |
29473233 |
atctgagtctaaggggtatcgtttgtggtgctc |
29473265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 3075368 - 3075276
Alignment:
| Q |
203 |
acatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttatgcatctgagtctaaggggtatcgtctgtgctgctc |
295 |
Q |
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| T |
3075368 |
acatgtcaatgatggaaaattagctccacgagccgttgagtgcatatttcttgattatgcatctgagtctaaggggtatcgtttgtggtgctc |
3075276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 161 - 295
Target Start/End: Complemental strand, 15239588 - 15239454
Alignment:
| Q |
161 |
tgattattctaatttaagaatttttgaatatcctgcatatgtacatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttat |
260 |
Q |
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|||||||||||||||||||||||||| || ||| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
15239588 |
tgattattctaatttaagaatttttggatgtccagcatatgcacttgtcaatgatggcaaattagctccaagagccgttgagtgcatatttctttcttat |
15239489 |
T |
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| Q |
261 |
gcatctgagtctaaggggtatcgtctgtgctgctc |
295 |
Q |
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|||||||||||||||||||||||| |||| ||||| |
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| T |
15239488 |
gcatctgagtctaaggggtatcgtttgtggtgctc |
15239454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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