View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_121 (Length: 299)
Name: NF3918_low_121
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_121 |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 4640740 - 4640951
Alignment:
| Q |
14 |
aatttcaatgacaaaatttcacaattaaaacaaagaaccatgtatgaggtagtaaatcctcttatctctactgacaaaatttctatggacttgtgattct |
113 |
Q |
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| T |
4640740 |
aatttcaatgacaaaatttcacaattaaaacaaagaaccatgtatgaggtagtaaatcctcttgtctctactgacaaaatttctatggacttatgattct |
4640839 |
T |
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| Q |
114 |
ctctacaagtgacaaatagttaaacatgaataaataaaaacataacatcatatnnnnnnnnttcattcagaattgaagatctgctactttgcacaagata |
213 |
Q |
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| T |
4640840 |
ctctacaagtgacaaatagttaaacatgaataaataaaaccataacatcatagaaaaaaaattcagtcagaattgaagatctgctactttgtacaagata |
4640939 |
T |
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| Q |
214 |
caaaaccattca |
225 |
Q |
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|||||||||||| |
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| T |
4640940 |
caaaaccattca |
4640951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 11469559 - 11469509
Alignment:
| Q |
113 |
tctctacaagtgacaaatagttaaacatgaataaataaaaacataacatca |
163 |
Q |
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| T |
11469559 |
tctctacaaatgacaaataattaaacataaataaattaaaacataacatca |
11469509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 4554894 - 4555045
Alignment:
| Q |
12 |
tcaatttcaatgacaaaatttcacaattaaaacaaagaaccatgtatgaggtagtaaatcctcttatctctactgacaaaatttctatggacttgtgatt |
111 |
Q |
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| T |
4554894 |
tcaacttcaatagcaaaatttcactattaaaatgaagaaccgtgtatgaggtagtagatacccttttctatagggacaaaatttccttgggcatgtgatt |
4554993 |
T |
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| Q |
112 |
ctctctacaagtgacaaatagttaaacatgaataaataaaaacataacatca |
163 |
Q |
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| T |
4554994 |
ttctctacaaatgacaaataattaaacataaataaattaaaacataacatca |
4555045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 34034539 - 34034647
Alignment:
| Q |
191 |
gatctgctactttgcacaagatacaaaaccattcatgacaaaattttcattgagcttctgcttctctctaatccctgaatcccattcccccaaactgaaa |
290 |
Q |
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| T |
34034539 |
gatctgctactttgtacaacataaaaaaccattcatgttaaaaattccattgaacttgtgcttctctttaacctctgaagacaattcccccaaactgaaa |
34034638 |
T |
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| Q |
291 |
aaccacacc |
299 |
Q |
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||||||||| |
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| T |
34034639 |
aaccacacc |
34034647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 34034404 - 34034470
Alignment:
| Q |
98 |
atggacttgtgattctctctacaagtgacaaatagttaaacatgaataaataaaaacataacatcata |
165 |
Q |
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| T |
34034404 |
atggacatgtgattctctctacaagtgacaaataattaaacatgaataaattaaaac-taacatcata |
34034470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 22499651 - 22499543
Alignment:
| Q |
191 |
gatctgctactttgcacaagatacaaaaccattcatgacaaaattttcattgagcttctgcttctctctaatccctgaatcccattcccccaaactgaaa |
290 |
Q |
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|||||||||||||| |||| ||| ||||||||||||| |||| || |||||| ||| ||||||||| ||| | ||||| | ||||||||||||||||| |
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| T |
22499651 |
gatctgctactttgtacaacataaaaaaccattcatgttaaaaattccattgaacttgtgcttctctttaacctctgaagacaattcccccaaactgaaa |
22499552 |
T |
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| Q |
291 |
aaccacacc |
299 |
Q |
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||||||||| |
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| T |
22499551 |
aaccacacc |
22499543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 22499786 - 22499720
Alignment:
| Q |
98 |
atggacttgtgattctctctacaagtgacaaatagttaaacatgaataaataaaaacataacatcata |
165 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
22499786 |
atggacatgtgattctctctacaagtgacaaataattaaacatgaataaattaaaac-taacatcata |
22499720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 6247264 - 6247214
Alignment:
| Q |
113 |
tctctacaagtgacaaatagttaaacatgaataaataaaaacataacatca |
163 |
Q |
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||||||||| ||||||||| |||||||| ||||||| |||||||||||||| |
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| T |
6247264 |
tctctacaaatgacaaataattaaacataaataaattaaaacataacatca |
6247214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 41519767 - 41519719
Alignment:
| Q |
12 |
tcaatttcaatgacaaaatttcacaattaaaacaaagaaccatgtatga |
60 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
41519767 |
tcaatttcaatggcaaaatttcacaattaaaatgaagaaccatgtatga |
41519719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 12350221 - 12350271
Alignment:
| Q |
113 |
tctctacaagtgacaaatagttaaacatgaataaataaaaacataacatca |
163 |
Q |
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||||||||| ||||||||| |||||||| ||||||| |||||||||||||| |
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| T |
12350221 |
tctctacaaatgacaaataattaaacataaataaattaaaacataacatca |
12350271 |
T |
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