View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_125 (Length: 292)
Name: NF3918_low_125
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 10429904 - 10429629
Alignment:
| Q |
1 |
tgcttcaatataaaatcctaactgtaattgacgttatctaatttttcaattcaatagttttcatgagtcaaacnnnnnnnncaatagttttccttgacta |
100 |
Q |
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| T |
10429904 |
tgcttcaaaataaaatcctaactgtaattgacgttatctaatttttcaattcaatagttttcatgagtcaaacaaaaaaaacaatagttttccttgacta |
10429805 |
T |
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| Q |
101 |
atgatgactctttgaattcctcctctataaataacaaaatagtgaaatacctactcctaacttaacacaattctttaaccctagtgaagaatcactcgta |
200 |
Q |
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| T |
10429804 |
atgatgactctttgaattcctcctttataaataacaaaatagtgaaatacctactcctaacttaacacaattctttaaccctagtgaagaatcactcata |
10429705 |
T |
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| Q |
201 |
atctcattcatatcatccatgtcgtcctctactgaatcctattttatctatattgaagaatcccaaaacactatcc |
276 |
Q |
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| T |
10429704 |
atctcattcatatcatccatgtcgtcctctactgaatcctattttatctatattgaggaatcccaaaacactatcc |
10429629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 10397411 - 10397317
Alignment:
| Q |
169 |
aattctttaaccctagtgaagaatcactcgtaatctcattcatatcatccatgtcgtcctctactgaatcctattttatctatattgaagaatcc |
263 |
Q |
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| T |
10397411 |
aattctttaaccctacgaaagaatcactcataatctcattcatatcatccatgtcgtcctccaatgaaccctatttcatcaatattgaagaatcc |
10397317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 10402277 - 10402182
Alignment:
| Q |
169 |
aattctttaaccctagtgaa-gaatcactcgtaatctcattcatatcatccatgtcgtcctctactgaatcctattttatctatattgaagaatcc |
263 |
Q |
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| T |
10402277 |
aattctttaaccctatggaaagaatcactcataatctcattcatatcatccatgtcgtcctccaatgaaccctatttcatccatattgaggaatcc |
10402182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 10407613 - 10407540
Alignment:
| Q |
187 |
aagaatcactcgtaatctcattcatatcatccatgtcgtcctctactgaatcctattttatctatattgaagaa |
260 |
Q |
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| T |
10407613 |
aagaatcactcataatctcatttatatcatccatgtcgtcctccaatgaaccctatttcatcaatattgaagaa |
10407540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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