View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_127 (Length: 290)
Name: NF3918_low_127
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_127 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 41351080 - 41351358
Alignment:
| Q |
1 |
tctaaccatatttcatcttcatttatgtggcttattggtttgtatatggattatttatgttaatgtgttgaagttattaaacttctaagtattttaggca |
100 |
Q |
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| T |
41351080 |
tctaaccatttttcatcttcatttatgtggcttattggtttgtatatggattatttatgttaatgtgttgaagttattaaacttctaagtattttaggca |
41351179 |
T |
|
| Q |
101 |
aatctttgatatgataattccatcatttgttttaatactcatatctggaattttcctattgtaacttctcaaatttaaggagaaacttactttatttaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41351180 |
aatctttgatatgataattccatcatttgttttaatactcatatctggcattttcctattgtaacttctcaaatttaaggagaaacttaccttatttaac |
41351279 |
T |
|
| Q |
201 |
gattttgctgttttaaagttgaatggattgtagcatttaattaggcattttttccccctcatcatttattttatcccta |
279 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41351280 |
gattttgctgtttttaagttgaatggattgtagcatttaattaggcattttttccccctcatcatttattttatcccta |
41351358 |
T |
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