View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_129 (Length: 287)
Name: NF3918_low_129
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_129 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 3542561 - 3542787
Alignment:
| Q |
37 |
cctcctataataataatcatcattaaatatcaaatactttatatcatatgattctatcctatcacaaggaaaca----------caaccttttcttctta |
126 |
Q |
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| T |
3542561 |
cctcctataataataatcatcattaaatatcatatactttatatcatatgatcctatcctatcacaaggaaacacaacacaacacaaccttttcttctta |
3542660 |
T |
|
| Q |
127 |
aaaaccaatcaattcattcattatcttccaacacaacacaaacacagaacaaaacatcatcaaaccttgccgttgatggaaaattgtcttacgatcaaac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3542661 |
aaaaccaatcaattcattcattatcttccaacacaacacaaacacagaacaaaacatcatcaaaccttgccgttgatggaaaattgtcttacaatcaaac |
3542760 |
T |
|
| Q |
227 |
ctcacataggattcttcacaagaccta |
253 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3542761 |
ctcacataggattcttcacaagaccta |
3542787 |
T |
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