View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_13 (Length: 761)

Name: NF3918_low_13
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_13
NF3918_low_13
[»] chr1 (1 HSPs)
chr1 (18-753)||(44332743-44333478)


Alignment Details
Target: chr1 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Original strand, 44332743 - 44333478
Alignment:
Q  18 gttctttagcatctcaacccatatactag-ctgctccttctggacatcagtgttgcacttagaataacatgttttggtcatgtgaaatttaaggggatta 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44332743 gttctttagcatctcaacccatatactagactgctccttctggacatcagtgttgcacttagaataacatgttttggtcatgtgaaatttaaggggatta 44332842  T
Q  117 ttattaatactaatttttcatagattgttgcatttaccatatttgaaaaacaagttgaatgaattttggtcaacattaaatttagnnnnnnnnngtttac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  44332843 ttattaatactaatttttcatagattgttgcatttaccatatttgaaaaacaagttgaatgaattttggtcaacattaaatttagaaaaaaaa-gtttac 44332941  T
Q  217 caaaaaggaggatggaaatcttatgtcaattatttaagataaagatgataatgcaattgtgtaggtaaatgtaagaaaaagaaaatgaaagcaatattgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44332942 caaaaaggaggatggaaatcttatgtcaattatttaagataaagatgataatgcaattgtgtaggtaaatgtaagaaaaagaaaatgaaagcaatattgt 44333041  T
Q  317 acctgatgatgagtttccctgtgaagaaggtaatctaaaatcagtaatatttctcatatcttgttgagaagaaccaccaacagcatcatcactcttaaga 416  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44333042 acctgatgatgagtttccctgtgaagaaggtaatctaaaatcagcaatatttctcatatcttgttgagaagaaccaccaacagaatcatcactcttaaga 44333141  T
Q  417 agaccatcttcacgcactcttttatgtccaacccatgaactagaccccaaaagagcagcactagaagaatacatacgaggagaattagaactagaagaga 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44333142 agaccatcttcacgcactcttttatgtccaacccatgaactagaccccaaaagagcagcactagaagaatacatacgaggagaattagaactagaagaga 44333241  T
Q  517 cagggacaaaacctgacatcattggaaaataaccacttccttgttggacttggacccactcattttgggcctggcccaatccatgctgagtcggcgctga 616  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44333242 cagggacaaaacctgacatcattggaaaatagccacttccttgttggacttggacccactcattttgggcctggcccaatccatgctgagtcggcgctga 44333341  T
Q  617 aaccataggacaagacattgccacctccccatactgctgttggttcaatccatgtgatcctgaagcttcttcctctttctcatcaccaccatgttcctcc 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44333342 aaccataggacaagacattgccacctccccatactgctgttggttcaatccatgtgatcctgaagcttcttcctctttctcatcaccaccatgttcctcc 44333441  T
Q  717 tccttcaacctcacgaactttcctgaatccctttgct 753  Q
    |||||||||||||||||||||||||||||||||||||    
T  44333442 tccttcaacctcacgaactttcctgaatccctttgct 44333478  T

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