View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_130 (Length: 283)
Name: NF3918_low_130
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_130 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 43024689 - 43024437
Alignment:
| Q |
15 |
caaaggaaatagaaacaaaccccatctgaggtgtaagagccaaaccattactaaggtgaaaaacaccatagtttgaagtatcataaatagagtgaaaatt |
114 |
Q |
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| T |
43024689 |
caaaagaaatagaaacaaaccccatctgaggtgtaagagccaaaccattactaaggtgaaaaacaccatagtttgaagtatcataaatagagtgaaaatt |
43024590 |
T |
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| Q |
115 |
tgatctgaaaatgggttttccgtaattttgcaagagaggttgtacaactcttgctgacacaaaaacagaggaaacatagatgaaaagaatgaataagtga |
214 |
Q |
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| T |
43024589 |
tgatctgaaaatgggttttccgtaattttgcaagagaggttgtacaactcttgctgacacaaaaacagaggaaacatagatgaaaagaatgaacaagtga |
43024490 |
T |
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| Q |
215 |
accaaaacactcttgttgtgtttctggaaccccattagtaacaaaacagtttc |
267 |
Q |
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| T |
43024489 |
accaaaacactcttgttgtgtttctggaaccccattagtaacaaaacagtttc |
43024437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 43038453 - 43038222
Alignment:
| Q |
25 |
agaaacaaaccccatctgaggtgtaagagccaaaccattactaaggtgaaaaacaccatagtttgaagtatcataaatagagtgaaaatttgatctgaaa |
124 |
Q |
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| T |
43038453 |
agaaacaaaccccatctgaggagtgagagccaaaccattactaagctgaaaaacgc-atagtttgaagtatcataaatagagtgaatatttgatctgaaa |
43038355 |
T |
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| Q |
125 |
atgggttttccgtaattttgcaagagaggttgtacaactcttgctgacacaaaaacagaggaaacatagatgaaaagaatgaataagtgaaccaaaacac |
224 |
Q |
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| T |
43038354 |
aaggattttccgtaattttgcaagagaggttgtgcaactcttgctgttaccgaaacagaggaagtacaaaggaagataatcaacaaatgaaccaaaacac |
43038255 |
T |
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| Q |
225 |
tcttgttgtgtttctggaaccccattagtaaca |
257 |
Q |
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| T |
43038254 |
ttttgttgtgtttgttcaaacccattagtaaca |
43038222 |
T |
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