View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_133 (Length: 281)

Name: NF3918_low_133
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_133
NF3918_low_133
[»] chr3 (16 HSPs)
chr3 (17-134)||(8260527-8260644)
chr3 (199-281)||(8260709-8260791)
chr3 (199-273)||(8265675-8265749)
chr3 (199-273)||(8258602-8258676)
chr3 (72-134)||(8350014-8350076)
chr3 (75-134)||(8258478-8258537)
chr3 (75-134)||(8265551-8265610)
chr3 (205-281)||(8350129-8350205)
chr3 (205-276)||(8252975-8253046)
chr3 (60-130)||(8334002-8334073)
chr3 (199-281)||(8352867-8352949)
chr3 (93-134)||(8352761-8352802)
chr3 (17-53)||(8258438-8258474)
chr3 (201-273)||(8356436-8356508)
chr3 (79-134)||(8252867-8252922)
chr3 (201-273)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 8260527 - 8260644
Alignment:
Q  17 aaataaatgtcgattgctctagtctcttgataagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260527 aaataaatgtcgattgctctagtctcttgataagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataag 8260626  T
Q  117 aaactacaattggagctc 134  Q
    ||||||||||||||||||    
T  8260627 aaactacaattggagctc 8260644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 8260709 - 8260791
Alignment:
Q  199 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaacaagt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagt 8260791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 8265675 - 8265749
Alignment:
Q  199 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 273  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 8265749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 8258602 - 8258676
Alignment:
Q  199 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 273  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccat 8258676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  72 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 134  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  75 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 134  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  75 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 134  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 8350129 - 8350205
Alignment:
Q  205 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaacaagt 281  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||| ||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagt 8350205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  205 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 276  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  60 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 130  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 8352867 - 8352949
Alignment:
Q  199 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaacaagt 281  Q
    |||||||||| |||||||||| |||||||   ||||| | ||||||||| | || || |||||||||||||||||||| ||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagt 8352949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  93 gataagagttaacagggaaataagaaactacaattggagctc 134  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 8258438 - 8258474
Alignment:
Q  17 aaataaatgtcgattgctctagtctcttgataagaaa 53  Q
    |||||||||||||||||||||||||||| ||||||||    
T  8258438 aaataaatgtcgattgctctagtctcttcataagaaa 8258474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  201 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 273  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  79 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 134  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
Q  201 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 273  Q
    ||||||||||||||||||||||| ||| | ||||  | || |||||| | ||||| | |||||||||||||||    
T  8360609 cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University