View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_135 (Length: 279)
Name: NF3918_low_135
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_135 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 45177560 - 45177792
Alignment:
| Q |
36 |
ctatttatggattcaactgtatggnnnnnnncctactacaaaataacaa-------caccattcatgttatgttaatgaaatggtccagctcgagtgnnn |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45177560 |
ctatttatggattcaactgtatggtttttttcctactacaaaataacaattaacaacaccattcatgttatgttaatgaaatggtccagctcgagtgaaa |
45177659 |
T |
|
| Q |
129 |
nnnnnnnnnnnnt-ttaagagtttgaaacacaatgataattcatcttcttgtgagtattaagttactccatgtagtaattagttttttctgattattaat |
227 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45177660 |
aatcaaacaaattgttaagagtttgaaacacaatgataattcatcttcttgtgagtattaagttactccatgtagtaattagttttttctgattattaat |
45177759 |
T |
|
| Q |
228 |
tccttcttatctaaagttcacagctaggcaatt |
260 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
45177760 |
tccttcttatctaaagttcacaactaggcaatt |
45177792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University