View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_137 (Length: 275)

Name: NF3918_low_137
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_137
NF3918_low_137
[»] chr2 (7 HSPs)
chr2 (1-256)||(38259485-38259739)
chr2 (1-96)||(38239368-38239464)
chr2 (120-205)||(22878167-22878252)
chr2 (123-215)||(43529777-43529869)
chr2 (125-239)||(28803451-28803565)
chr2 (122-215)||(41905834-41905927)
chr2 (117-217)||(15120240-15120340)
[»] chr3 (3 HSPs)
chr3 (122-200)||(48286728-48286806)
chr3 (123-205)||(49845459-49845541)
chr3 (123-215)||(45541630-45541722)
[»] chr1 (4 HSPs)
chr1 (115-205)||(5157141-5157231)
chr1 (123-210)||(23373232-23373319)
chr1 (123-183)||(12564418-12564478)
chr1 (123-215)||(33723301-33723393)
[»] chr7 (5 HSPs)
chr7 (123-210)||(22387815-22387902)
chr7 (123-205)||(30535632-30535714)
chr7 (130-205)||(2825162-2825237)
chr7 (136-210)||(48157052-48157126)
chr7 (158-215)||(36537967-36538024)
[»] chr6 (4 HSPs)
chr6 (123-193)||(13908321-13908391)
chr6 (158-210)||(32917261-32917313)
chr6 (158-215)||(27595521-27595578)
chr6 (123-204)||(28088142-28088223)
[»] chr8 (2 HSPs)
chr8 (125-210)||(39551130-39551215)
chr8 (169-210)||(29699337-29699378)
[»] chr4 (2 HSPs)
chr4 (137-205)||(18628486-18628554)
chr4 (131-210)||(4691912-4691991)
[»] chr5 (1 HSPs)
chr5 (123-215)||(34205300-34205392)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 38259485 - 38259739
Alignment:
Q  1 tccctactaaagttgcttttgaccaaactgtgtggttaactatttgcaacaccatctactttgtggtttgggtttgttgtgtttcgactgtttggaacac 100  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38259485 tccctattaaagttgcttttgaccaaactgtgtggtcaactatttgcaacaccatctactttgtggtttgggtttgttgcgtttcgactctttggaacac 38259584  T
Q  101 caactatttctttcttaggatatgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaac 200  Q
    |||||||||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||    
T  38259585 caactatttgat-cttaggatatgtttgaattgatttatttgatcttatttacggacataaacacttctgagactctttgaaatagcttatggaaacaac 38259683  T
Q  201 ttatggcatgatcattaactctccaggatcgcttaagaagagagcttatggcttat 256  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38259684 ttatggtatgatcattaactctccaggatcgcttaagaagagagcttatggcttat 38259739  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38239368 - 38239464
Alignment:
Q  1 tccctactaaagttgcttttgaccaaactgtgtggttaactatttgcaacaccatctactttgtgg-tttgggtttgttgtgtttcgactgtttgga 96  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||| |||||| ||||||||| ||||||    
T  38239368 tccctgctaaagttgcttttgaccaaactgtgtggtcagctatttggaacaccatctactttgtggttttgggcttgttgcgtttcgactctttgga 38239464  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 22878252 - 22878167
Alignment:
Q  120 atatgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatg 205  Q
    ||||||||| ||||| |||||||| |||||  || || |||| ||||| ||||||| ||||||| | ||||||||||||| |||||    
T  22878252 atatgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaacaaattatg 22878167  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 43529777 - 43529869
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcat 215  Q
    |||||||||||| |||||||| ||||| ||  | ||||| ||||||||| ||| ||||||| || ||||| ||||| |||||| |||| ||||    
T  43529777 tgtttgaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagcttatgccatgttcat 43529869  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 28803451 - 28803565
Alignment:
Q  125 tttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcattaactctcc 224  Q
    |||| ||||| |||||||| ||||| ||| |  |||| ||| | ||||||| |||| || ||| ||||||||||||||||| ||||  ||| | ||||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataagctctcc 28803550  T
Q  225 aggatcgcttaagaa 239  Q
    ||||| | |||||||    
T  28803551 aggatagtttaagaa 28803565  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 41905834 - 41905927
Alignment:
Q  122 atgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcat 215  Q
    |||||||| |||| |||||||| ||||||||     |||||||||| |||||||||| | || | |||||| ||||||||||| ||||| ||||    
T  41905834 atgtttgatttgacttatttgaacttatttatttgcataaacacttatgagactcttcgagagagcttatgaaaacaacttattgcatgttcat 41905927  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 15120340 - 15120240
Alignment:
Q  117 aggatatgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcatt 216  Q
    ||||| |||||| ||||| |||||||| ||||| |||    ||||||| || |||  || ||||||| | ||||||||||||||||||| |||| |||||    
T  15120340 aggatctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcatt 15120241  T
Q  217 a 217  Q
    |    
T  15120240 a 15120240  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 48286728 - 48286806
Alignment:
Q  122 atgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaac 200  Q
    |||||||||||||||||||||| ||||| |||||| | |||||| | ||||||| || |||| |||||||| |||||||    
T  48286728 atgtttgaattgatttatttgagcttatctacggacaaaaacacctttgagactattagggagaacttatgaaaacaac 48286806  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 49845459 - 49845541
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatg 205  Q
    |||||| ||||| |||||||| ||||| |||   |||||| |||| ||| ||| ||||||| | |||||||||||||||||||    
T  49845459 tgtttggattgacttatttgagcttatatactagtataaaaacttatgaaactatttgggagagcttatggaaacaacttatg 49845541  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 45541722 - 45541630
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcat 215  Q
    |||||| ||||| |||||||| ||||||||  | ||||||||||| | ||||| ||| | | |||||||| ||||| |||||| |||| ||||    
T  45541722 tgtttggattgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcat 45541630  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 5157231 - 5157141
Alignment:
Q  115 ttaggatatgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatg 205  Q
    ||||||| | |||| ||||| |||||||| ||||| |||||| |||||||||| ||| ||| ||||||| | ||||| |||||||||||||    
T  5157231 ttaggatctatttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttatg 5157141  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 23373232 - 23373319
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatg 210  Q
    |||||||||||| |||||||| ||| | ||| ||||||| ||||| ||||| | ||||||| | ||||| ||||||||||||| ||||    
T  23373232 tgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatg 23373319  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 12564418 - 12564478
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttggga 183  Q
    |||||||||||| |||||||| ||||| ||| ||||||| ||||| || |||| |||||||    
T  12564418 tgtttgaattgacttatttgagcttatatactgatataagcacttgtgtgactgtttggga 12564478  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 33723301 - 33723393
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcat 215  Q
    |||||| ||||| |||||||| ||||| |||    |||||||||| |||||||  |||||| |||||||||||||| || ||| |||| ||||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcat 33723393  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 22387815 - 22387902
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatg 210  Q
    |||||| ||||| ||| | || ||||||||| || |||||||| | ||||||| ||||||| | |||||| |||||||||||||||||    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatg 22387902  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 30535714 - 30535632
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatg 205  Q
    |||||||||||| ||||||||  | |||||| || ||||||||||  |||||| ||| ||| |||||||| ||||||||||||    
T  30535714 tgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaacttatg 30535632  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 2825162 - 2825237
Alignment:
Q  130 attgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatg 205  Q
    |||||||||||||| ||||| |||  |||||| ||||| ||||||||||||| | |||||||| || || ||||||    
T  2825162 attgatttatttgagcttatctacttatataagcacttgtgagactctttggaagaacttatgaaaccatcttatg 2825237  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 48157052 - 48157126
Alignment:
Q  136 ttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatg 210  Q
    |||||||| ||||||||| ||| ||| || || ||||||| ||||||| | ||||| ||||||||||||| ||||    
T  48157052 ttatttgagcttatttactgatttaagcatttgtgagactgtttgggagagcttatagaaacaacttatgccatg 48157126  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 36538024 - 36537967
Alignment:
Q  158 ataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcat 215  Q
    |||||||||| ||||| | |||| || ||||||||||||||||||||| |||| ||||    
T  36538024 ataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttcat 36537967  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 13908391 - 13908321
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatgg 193  Q
    |||||||||||| |||||||| ||||| ||| || |||||||||| ||| ||||||| ||| |||||||||    
T  13908391 tgtttgaattgacttatttgaacttatctactgacataaacacttgtgacactctttaggagaacttatgg 13908321  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 32917313 - 32917261
Alignment:
Q  158 ataaacacttctgagactctttgggataacttatggaaacaacttatggcatg 210  Q
    |||||||||| ||||||| ||||||| | ||||||||||||||||||| ||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatg 32917261  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 27595521 - 27595578
Alignment:
Q  158 ataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcat 215  Q
    |||| ||||| ||||||| ||||||| || |||||||||||||||||| |||| ||||    
T  27595521 ataagcacttatgagactgtttgggagaatttatggaaacaacttatgacatgttcat 27595578  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 28088142 - 28088223
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttat 204  Q
    |||||| || || |||||||| ||||||||  ||||||| ||||| ||||||  ||||| ||  ||||||||||||||||||    
T  28088142 tgtttggatagacttatttgagcttatttattgatataaccacttttgagacagtttggaatggcttatggaaacaacttat 28088223  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 39551130 - 39551215
Alignment:
Q  125 tttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatg 210  Q
    |||| ||||| ||||||||  |||| ||||||||||| || || ||| ||| ||||||| || |||||||||||||||||| ||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaacttatgacatg 39551215  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 29699378 - 29699337
Alignment:
Q  169 tgagactctttgggataacttatggaaacaacttatggcatg 210  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||    
T  29699378 tgagactgtttgggagaacttatagaaacaacttatggcatg 29699337  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 18628486 - 18628554
Alignment:
Q  137 tatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatg 205  Q
    ||||||| ||||| ||| || |||||||||| ||||||| ||||||| | |||||| ||||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatg 18628554  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 4691991 - 4691912
Alignment:
Q  131 ttgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatg 210  Q
    ||||||||||||| ||||| ||| |  | || ||||| ||||||| |||| || ||||||||||||||||||||| ||||    
T  4691991 ttgatttatttgagcttatctactgtcacaatcacttgtgagactatttgagaaaacttatggaaacaacttatgacatg 4691912  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 34205392 - 34205300
Alignment:
Q  123 tgtttgaattgatttatttgatcttatttacggatataaacacttctgagactctttgggataacttatggaaacaacttatggcatgatcat 215  Q
    |||||| ||||| |||||||| ||||||||| || |||| || || ||  ||| ||| ||| | ||||||||||||||||||| |||| ||||    
T  34205392 tgtttggattgacttatttgaacttatttactgacataagcatttatggaactattttggagagcttatggaaacaacttatgtcatgttcat 34205300  T

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