View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_138 (Length: 273)
Name: NF3918_low_138
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_138 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 64 - 266
Target Start/End: Original strand, 40578112 - 40578313
Alignment:
| Q |
64 |
gagtctctttactattattcatagttgtttgattgctagctactttaatccctattattcatgtgctatagctggtgtcgtaagacatattgcttttgat |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
40578112 |
gagtctctttactattattcatagttgtttgattgctagctactttaatccctattattcatgtgctattgctggtgccgtaagacatattgcttttgat |
40578211 |
T |
|
| Q |
164 |
tccttagcttttttgatttagttttcattgccgtataaattcattgcctttacaaactacttattcatgtccagttgctgtgatgttttactctagtgat |
263 |
Q |
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||| |||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40578212 |
tccatagc-tttttgatttagtgttcattgccgtgtaaattcattgcctttagaaactacttattcatgtccagttgctgtgatgttttactctagtgat |
40578310 |
T |
|
| Q |
264 |
att |
266 |
Q |
| |
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||| |
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| T |
40578311 |
att |
40578313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 64 - 266
Target Start/End: Complemental strand, 19804948 - 19804747
Alignment:
| Q |
64 |
gagtctctttactattattcatagttgtttgattgctagctactttaatccctattattcatgtgctatagctggtgtcgtaagacatattgcttttgat |
163 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
19804948 |
gagtctctttactattattcttagttgttttattgctagctactttaatccctattattcatgtgctattgctggtgccgtaagacatattgcttttgat |
19804849 |
T |
|
| Q |
164 |
tccttagcttttttgatttagttttcattgccgtataaattcattgcctttacaaactacttattcatgtccagttgctgtgatgttttactctagtgat |
263 |
Q |
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| T |
19804848 |
tccttagct-ttttgatttagtgttcattgccgtgtaaattcattgcctttacaaactacttattcatgtccagttgctgtgatgttttactctagtaat |
19804750 |
T |
|
| Q |
264 |
att |
266 |
Q |
| |
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||| |
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| T |
19804749 |
att |
19804747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 64 - 266
Target Start/End: Complemental strand, 27775422 - 27775221
Alignment:
| Q |
64 |
gagtctctttactattattcatagttgtttgattgctagctactttaatccctattattcatgtgctatagctggtgtcgtaagacatattgcttttgat |
163 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
27775422 |
gagtctctttactattattcttagttgttttattgctagctactttaatccctattattcatgtgctattgctggtgccgtaagacatattgcttttgat |
27775323 |
T |
|
| Q |
164 |
tccttagcttttttgatttagttttcattgccgtataaattcattgcctttacaaactacttattcatgtccagttgctgtgatgttttactctagtgat |
263 |
Q |
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|
||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27775322 |
tccttagct-ttttgatttagtgttcattgccgtgtaaattcattgcctttacaaactacttattcatgtccagttgctgtgatgttttactctagtaat |
27775224 |
T |
|
| Q |
264 |
att |
266 |
Q |
| |
|
||| |
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|
| T |
27775223 |
att |
27775221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 32879413 - 32879331
Alignment:
| Q |
69 |
tctttactattattcatagttgtttgattgctagctactttaatccctattattcatgtgctatagctggtgtcgtaagacat |
151 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||| ||| ||||||| | |||||||| |
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| T |
32879413 |
tctttactgttattcattgttgtttgattgctagctactttaatccttgttattcatgtgttattgctggtgccataagacat |
32879331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 19312547 - 19312465
Alignment:
| Q |
134 |
gctggtgtcgtaagacatattgcttttgattccttagcttttt--tgatttagttttcattgccgtataaattcattgccttta |
215 |
Q |
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||||||| ||||||||||||||||||| || |||| ||||| | ||||||||||||| ||||||| | ||||||||||||||| |
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| T |
19312547 |
gctggtgccgtaagacatattgcttttaat-ccttggctttataatgatttagttttcgttgccgtgtcaattcattgccttta |
19312465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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