View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_139 (Length: 271)
Name: NF3918_low_139
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_139 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 34532628 - 34532371
Alignment:
| Q |
1 |
cttccgccatcattaatactacagttgatgtccaacccgtaaatggatgtgctccttttcccttgccgttaacctgatcgtactgctcccacaaaaatcc |
100 |
Q |
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| T |
34532628 |
cttccgccatcattaatactacagttgatgtccaacccgtaaatggatgtgctccttttcccttgccgttaacctgatcgtactgctcccacaaaaatcc |
34532529 |
T |
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| Q |
101 |
agtctgttgataattgtgcaccatatttctgcagtaaaagggaaatacataagaccgactaatagctttaaacaggattcaagtaccaaacaaactcaaa |
200 |
Q |
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| T |
34532528 |
agtctgttgataattgtgcaccatatttctgcagtaaaagggaaatacataagaccgactaatagctttaaacaggattcaagtaccaaacaaactcaaa |
34532429 |
T |
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| Q |
201 |
taatacctaattaaattgctcctcaattctttgtacatggtcttagctttttcttgat |
258 |
Q |
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| T |
34532428 |
taatacctaattaaattgctcctcaattctttgtacatggtcttagctttttcttgat |
34532371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 34560799 - 34560650
Alignment:
| Q |
1 |
cttccgccatcattaatactacagttgatgtccaacccgtaaatggatgtgctccttttcccttgccgttaacctgatcgtactgctcccacaaaaatcc |
100 |
Q |
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| T |
34560799 |
cttctgccatgattaatactacaagtgatgtccaacccgtaaatggacgtgctccttttcccttgcctttaacctgatcgtactgctcccaaaaaaatcc |
34560700 |
T |
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| Q |
101 |
agtctgttgataattgtgcaccatatttctgcagtaaaagggaaatacat |
150 |
Q |
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| T |
34560699 |
agtctcttgataattacgtactatatttctgcaatatcagggaaatacat |
34560650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 34541771 - 34541692
Alignment:
| Q |
164 |
agctttaaacaggattcaagtaccaaacaaactcaaataata---cctaattaaattgctcctcaattctttgtacatgg |
240 |
Q |
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| T |
34541771 |
agctttaaacaagactccagtaccaaacaaactcaaataataatacctaattaaattgctcctcaattctttgtacatgg |
34541692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34542055 - 34541959
Alignment:
| Q |
1 |
cttccgccatcattaatactacagttgatgtccaacccgtaaatggatgtgctccttttcccttgccgttaacctgatcgtactgctcccacaaaaat |
98 |
Q |
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| T |
34542055 |
cttccgccatgat-aatactacagtcgatgtccaacccgtaaatggatgtgctcctttttccttgctgttaatctgacaatacaggtcccacaaaaat |
34541959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 34560599 - 34560551
Alignment:
| Q |
187 |
caaacaaactcaaataatacctaattaaattgctcctcaattctttgta |
235 |
Q |
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|||| ||| ||||| ||||||||||||||||||| ||||||||| |||| |
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| T |
34560599 |
caaagaaaatcaaacaatacctaattaaattgcttctcaattctgtgta |
34560551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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