View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_14 (Length: 722)
Name: NF3918_low_14
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 12 - 704
Target Start/End: Original strand, 15451217 - 15451923
Alignment:
| Q |
12 |
agagataagccttgaaacaccttgagtccacacatcatattctctttgacttctgcactcaaactcaacgacgccacgcgttattgttttcaaaccaaag |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15451217 |
agagatgagccttgaaacaccttgagtccacacatcatattctctttgacttctgcactcaaactcaacgacgccacgcgtaattgttttcaaaccaaag |
15451316 |
T |
|
| Q |
112 |
taacgacggttgtcaccaccttctagcaagtgacgtcctgaccaagccggcatttctttgataacgccgatcacaacatctgcgnnnnnnntttcaaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15451317 |
taacgacggttgtcaccaccttctagcaagtgacgtcctggccaagccggcatttctttgataacgccgatcacaacatctgcgaaaaaaatttcaaaaa |
15451416 |
T |
|
| Q |
212 |
gcatgagtcggggtaaacttaatcggccaatgatcttatattagatacttttcatattgatcggccaat----------------gatcgaaccctgatc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15451417 |
gcatgagtcggggtaaacttaatcggccaatgatcttatattagatacttttcatattgatcggccaatgatcgaacccttgatggatcgaaccctgatc |
15451516 |
T |
|
| Q |
296 |
aaaggatgagtgtgaaggtggttttgatttaaagaagaatccttttgatccatttgaaacattaaagaataaagagaataactttcacaaatccccaaat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15451517 |
aaaggatgagtgtgaaggtggttttgatttaaagaaaaatccttttgatccatttgaaacattaaagaataaagagaataactttcacaaatccccaaat |
15451616 |
T |
|
| Q |
396 |
gaaacaagacccacctccaaatcagttaaagtatgataagagaaggggacaaaaacaaaagttgatgaaaactcactcnnnnnnnnnnnngtgatggtcc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15451617 |
gaaacaagacccacctccaaatcagttaaagtatgataagagaaggggacaaaaacaaaagttgatgaaaactcactctttttcttttttgtgatggtcc |
15451716 |
T |
|
| Q |
496 |
cagcaacatgtctactcttcatctttagcataacctgaaacaaaaagaggatctaaagagttactacaatttggtagatttctaggaaactgaactgagt |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15451717 |
cagcaacatgtctactcttcatctttagcataacctgaaacaaaaagaggatctaaagagttactacaatttggtagatttctaggaaactgaactgagt |
15451816 |
T |
|
| Q |
596 |
tgatcccttaacatcatcacatcgttctaagagccctcactttagtcacttctttccactaccagattcttttattcatcattaaatctcatataattga |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15451817 |
tgatcccttaacatcatcacatcgttctaagagccctcactttagtcacttctttccactaccagattc--ttattcatcattaaatctcatataattga |
15451914 |
T |
|
| Q |
696 |
tggccaaat |
704 |
Q |
| |
|
||||||||| |
|
|
| T |
15451915 |
tggccaaat |
15451923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 46576138 - 46576283
Alignment:
| Q |
28 |
acaccttgagtccacacatcatattctctttgacttctgcactcaaactcaacgacgccacgcgttattgttttcaaaccaaagtaacgacggttgtcac |
127 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||| | |||||||||| |||||||| |||||| | ||||||||| |||||||| ||||| || |||| |
|
|
| T |
46576138 |
acaccctgagtccacacgtcatactctctttgattcatgcactcaaattcaacgacaccacgcaacagtgttttcaatccaaagtagcgacgattctcac |
46576237 |
T |
|
| Q |
128 |
caccttctagcaagtgacgtcctgaccaagccggcatttctttgat |
173 |
Q |
| |
|
| ||||| ||||| || ||||| | |||||| ||||| |||||||| |
|
|
| T |
46576238 |
cgccttccagcaaatggcgtcccgtccaagctggcatatctttgat |
46576283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 31706170 - 31706228
Alignment:
| Q |
22 |
cttgaaacaccttgagtccacacatcatattctctttgacttctgcactcaaactcaac |
80 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |||| || ||||||||||| |
|
|
| T |
31706170 |
cttgaaacaccttgtgtccacaattcatattctctttgatttctacattcaaactcaac |
31706228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 46576359 - 46576398
Alignment:
| Q |
379 |
ttcacaaatccccaaatgaaacaagacccacctccaaatc |
418 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
46576359 |
ttcacaaatccctaaatggaacaagacccacctccaaatc |
46576398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 38273902 - 38273844
Alignment:
| Q |
13 |
gagataagccttgaaacaccttgagtccacacatcatattctctttgacttctgcactc |
71 |
Q |
| |
|
|||| |||||| ||||| ||||||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
38273902 |
gagagaagcctagaaactccttgagtccagacatcatattctctttgatttctacactc |
38273844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 38269866 - 38269807
Alignment:
| Q |
18 |
aagccttgaaacaccttgagtccacacatcatattctctttgacttctgcactcaaactc |
77 |
Q |
| |
|
|||||| ||||| ||||||||||| | |||||||||||||||| |||| ||||| ||||| |
|
|
| T |
38269866 |
aagcctagaaaccccttgagtccagatatcatattctctttgatttctacactcgaactc |
38269807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University