View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_141 (Length: 271)
Name: NF3918_low_141
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_141 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 25875933 - 25875677
Alignment:
| Q |
3 |
taggtaatttctaaagctgttaagtgctatctgaggctatatccaatttggttatatcaatagaattttatctgaacaatttaaaatacttgaactatga |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25875933 |
taggtaatttctaaagctgttaagtgttatctgaggctatatccaatttagttatatcaatagaattttatctgaacaatttaaaatacttgaactatga |
25875834 |
T |
|
| Q |
103 |
ttgcctctattttgaaaatattcatgttaagaacacaaatttccctgtctttatttatttccttttgcaattttagttgactttcccattctaaacaatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25875833 |
ttgcctctattttgaaaatattcatgttaagaacacaaatttccctgtctttatttatttccttttgcaattttagttgactttcccattctaaacaatc |
25875734 |
T |
|
| Q |
203 |
catacaatactatagtaacaatcttataatttgaaattgtgtgtattgaaaggattg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25875733 |
catacaatactatagtaacaatcttataatttgaaattgtgtgtattgaaaggattg |
25875677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 25885623 - 25885563
Alignment:
| Q |
44 |
tccaatttggttatatcaatagaattttatctgaacaatttaaaatacttgaactatgatt |
104 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||||| |||| ||||| |||| |
|
|
| T |
25885623 |
tccaatttgattatttcaatagaattttgtctgaacaatttaaaacacttcaactaagatt |
25885563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University