View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_144 (Length: 268)
Name: NF3918_low_144
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_144 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 3734512 - 3734391
Alignment:
| Q |
11 |
caaaggcactgattgaaatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaaggtatatgtattggaa |
110 |
Q |
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| T |
3734512 |
caaagtcactgattgaaatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaaggtatatatattggaa |
3734413 |
T |
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| Q |
111 |
taccatgaaattaattgataac |
132 |
Q |
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| T |
3734412 |
taccatgaaattaattgataac |
3734391 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 3734348 - 3734275
Alignment:
| Q |
179 |
gtgattgcaggaattattataggtgttcagtggaggggtgtcctgtnnnnnnnngagttgagagagataataat |
252 |
Q |
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| T |
3734348 |
gtgattgcaggaattattataggtgttcagtggaggggtgtcctgtaaaaaaaagagttgagagagataataat |
3734275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 48289093 - 48289018
Alignment:
| Q |
23 |
ttgaaatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaaggta |
98 |
Q |
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| T |
48289093 |
ttgaaattctggatgatgggttcagatggaggaagtacggaaagaagatggtgaaaaacagccccaatccaaggta |
48289018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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