View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_149 (Length: 263)
Name: NF3918_low_149
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_149 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 33206121 - 33206371
Alignment:
| Q |
5 |
tctttattttatttcttccgaggtaaataaactaatatgttagtatcaatgttacaaaataatttgtgagcacatgcgtgcgtgcatgacttataaagtt |
104 |
Q |
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| T |
33206121 |
tctttagtttatttcttccgaggtaaataaaataatatgttagtatcaatgttacaaaataatttgtgagcgcatgcgtgcgtgcgtgacttataaagtt |
33206220 |
T |
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| Q |
105 |
gttcatccaaaagttgagagaaaacatggtcaaaaaaggttatctctcatatatttgttccattgattaaatttacatagaagatttacgatattagtgt |
204 |
Q |
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| T |
33206221 |
gttcatccaaaagttgagagaaaacatgatcaaaaaaggttatctctcatatatttgttccattgattaaatttacatagaagatttacgatattattgt |
33206320 |
T |
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| Q |
205 |
atccgcatcatacactaaatttcatgcaatcgtgacatatctcttcatctc |
255 |
Q |
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| T |
33206321 |
atccgcatcatacactaaatttcatgcaatcgtgacatatctcttcatctc |
33206371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 33206783 - 33206973
Alignment:
| Q |
5 |
tctttattttatttcttccgaggtaaataaactaatatgttagtatcaatgttacaaaataatttgtgagcacatgcgtgcg------tgcatgacttat |
98 |
Q |
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| T |
33206783 |
tctttattgtctttcttccgaggcaaatcaactaatacattagtatcaatatcacaaaacaatttgtgtgggcgcgcgtgcgcgtatatgcgtgacttat |
33206882 |
T |
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| Q |
99 |
aaagttgttcatccaaaagttgagagaaaacatggtcaaaa--aaggttatctctcatatatttgttccattgattaaatttacatagaaga |
188 |
Q |
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| T |
33206883 |
aaaattattcatccaaaaacgggaagaaaacatggtgaaaaaaaaggttatttctcatata-ttatttcatcgattaaatttacatagaaga |
33206973 |
T |
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