View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_154 (Length: 261)

Name: NF3918_low_154
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_154
NF3918_low_154
[»] chr1 (12 HSPs)
chr1 (18-248)||(52819374-52819604)
chr1 (20-153)||(52819580-52819713)
chr1 (38-147)||(52819274-52819383)
chr1 (38-183)||(52819478-52819623)
chr1 (122-231)||(52819598-52819707)
chr1 (120-246)||(52819272-52819398)
chr1 (43-105)||(11881466-11881528)
chr1 (44-87)||(52819208-52819251)
chr1 (121-189)||(52819765-52819833)
chr1 (38-105)||(52819766-52819833)
chr1 (43-105)||(11891096-11891158)
chr1 (44-105)||(11890832-11890893)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 52819374 - 52819604
Alignment:
Q  18 gtgacttgtacacatatgttggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagtacgggggtttgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819374 gtgacttgtacacatatgttggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagtacgggggtttgta 52819473  T
Q  118 cacaggtgaaggtggaggtggagacttgtagtaataaactggtgatggtggaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtggg 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819474 cacaggtgaaggtggaggtggagacttgtagtagtaaactggtgatggtggaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtggg 52819573  T
Q  218 ggtggagacttgtacacgtaagttggtgatg 248  Q
    |||||||||||||||||||||||||||||||    
T  52819574 ggtggagacttgtacacgtaagttggtgatg 52819604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 52819580 - 52819713
Alignment:
Q  20 gacttgtacacatatgttggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagtacgggggtttgtaca 119  Q
    ||||||||||| || |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| |    
T  52819580 gacttgtacacgtaagttggtgatggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagtatgggggtttgtaaa 52819679  T
Q  120 caggtgaaggtggaggtggagacttgtagtaata 153  Q
    ||||||| ||||| ||||| |||||||| |||||    
T  52819680 caggtgatggtgggggtggtgacttgtaataata 52819713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 52819274 - 52819383
Alignment:
Q  38 ggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagtacgggggtttgtacacaggtgaaggtggaggtg 137  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || || |||||||| |||||||| ||||| ||||    
T  52819274 ggtgatggcggaggtggtgaattgtacttgtaaactggtgttggaggaggaggtgacttgtagtaatagggtggtttgtatacaggtgatggtgggggtg 52819373  T
Q  138 gagacttgta 147  Q
    | ||||||||    
T  52819374 gtgacttgta 52819383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 52819478 - 52819623
Alignment:
Q  38 ggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagtacgggggtttgtacacaggtgaaggtggaggtg 137  Q
    ||||| ||||||||||| || ||||| | ||||||||||| ||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||    
T  52819478 ggtgaaggtggaggtggagacttgtagtagtaaactggtgatggtggaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtgggggtg 52819577  T
Q  138 gagacttgtagtaataaactggtgatggtggaggaggtgacttgta 183  Q
    ||||||||||    |||  ||||||||||||||| ||||| |||||    
T  52819578 gagacttgtacacgtaagttggtgatggtggaggtggtgaattgta 52819623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 52819598 - 52819707
Alignment:
Q  122 ggtgaaggtggaggtggagacttgtagtaataaactggtgatggtggaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtgggggtg 221  Q
    ||||| ||||||||||| || ||||| |  |||| ||||| ||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  52819598 ggtgatggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtg 52819697  T
Q  222 gagacttgta 231  Q
    | ||||||||    
T  52819698 gtgacttgta 52819707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 52819272 - 52819398
Alignment:
Q  120 caggtgaaggtggaggtggagacttgtagtaataaactggtgatggtggaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtggggg 219  Q
    ||||||| || |||||||| || ||||| |  |||||||||| ||| ||||||||||||||||| || || || ||||| || |||||||||||||||||    
T  52819272 caggtgatggcggaggtggtgaattgtacttgtaaactggtgttggaggaggaggtgacttgtagtaatagggtggtttgtatacaggtgatggtggggg 52819371  T
Q  220 tggagacttgtacacgtaagttggtga 246  Q
    ||| ||||||||||| || ||||||||    
T  52819372 tggtgacttgtacacatatgttggtga 52819398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 11881528 - 11881466
Alignment:
Q  43 cggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagta 105  Q
    ||||||||||||||| |||||||||||||||||||  ||||| || ||||| |||||||||||    
T  11881528 cggtggaggtggtgagttgtatttgtaaactggtgagggaggtggaggtgatttgtagtagta 11881466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 52819208 - 52819251
Alignment:
Q  44 ggtggaggtggtgaattgtatttgtaaactggtgttggaggagg 87  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  52819208 ggtggaggtggtgacttgtacttgtaaactggtgttggaggagg 52819251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 52819765 - 52819833
Alignment:
Q  121 aggtgaaggtggaggtggagacttgtagtaataaactggtgatggtggaggaggtgacttgtaatagta 189  Q
    |||||| ||||||||||| ||||||||   |||||| ||||| || ||||||||||||||||| |||||    
T  52819765 aggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagta 52819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 52819766 - 52819833
Alignment:
Q  38 ggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagta 105  Q
    ||||| |||||||||||||| |||||| | ||||| ||||  |||||||| ||||| |||||||||||    
T  52819766 ggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagta 52819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 11891158 - 11891096
Alignment:
Q  43 cggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagta 105  Q
    ||||||||||||||| ||||| |||||||| ||||  ||||| || ||||| |||||||||||    
T  11891158 cggtggaggtggtgagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagta 11891096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 11890893 - 11890832
Alignment:
Q  44 ggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagta 105  Q
    |||||||||||||| || || |||||||||||||  ||||| || ||||| |||||||||||    
T  11890893 ggtggaggtggtgagttatacttgtaaactggtgagggaggtggaggtgatttgtagtagta 11890832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University