View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_155 (Length: 261)
Name: NF3918_low_155
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_155 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 5918321 - 5918564
Alignment:
| Q |
4 |
ctcatctataaacctcacctcatggtctgcgaaagctttggcataacttccagttaggtgtcgaatttcagatggatccacatcataaaaaaccggcaaa |
103 |
Q |
| |
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||||||| |||||||| |||||| | ||| ||||||| |||||| |||| ||||||| |||||||| |||||||| ||||||||||||| ||| ||| |
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| T |
5918321 |
ctcatctccaaacctcatctcatgttttgcaaaagcttcagcataagttccggttaggtttcgaatttgggatggatctacatcataaaaaatcggtaaa |
5918420 |
T |
|
| Q |
104 |
aataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatgcatagttagtggaaaaaacaacaatgaaaa |
203 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5918421 |
aatatccgtccttgtgatttggaacacccaagaatagtaacaagttcagtcaaacagaaagttgaagatgcatagttagtggaaaaaacaacaatgaaaa |
5918520 |
T |
|
| Q |
204 |
ttttggattctttgatggcttgaagaagagtaggtgtaatttct |
247 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5918521 |
ttctggattctttgatggcttgaagaagagtaggtgtaatttct |
5918564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5977949 - 5978195
Alignment:
| Q |
1 |
cttctcatctataaacctcacctcatggtctgcgaaagctttggcataacttccagttaggtgtcgaatttcagatggatccacatcataaaaaaccggc |
100 |
Q |
| |
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|||||||||| ||||||||||||||| | ||| ||||||| |||||| |||| ||||||| ||| |||| |||||||||||||| |||||||||||| |
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| T |
5977949 |
cttctcatctccaaacctcacctcatgttttgcaaaagcttcagcataagttcctgttaggtttcggatttgggatggatccacatcgtaaaaaaccggc |
5978048 |
T |
|
| Q |
101 |
aaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatgcatagttagtggaaaaaacaacaatga |
200 |
Q |
| |
|
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| T |
5978049 |
aaaaataaccttccttgtaacattgagcactcaaggatggtaacaagttcagtcaaacaaaacgttgaagatgcatagttaggggagaaaatagcaatga |
5978148 |
T |
|
| Q |
201 |
aaattttggattctttgatggcttgaagaagagtaggtgtaatttct |
247 |
Q |
| |
|
||||| | |||| ||| ||||||||||||||||||||||| |||||| |
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|
| T |
5978149 |
aaattctagattgtttaatggcttgaagaagagtaggtgtgatttct |
5978195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5983922 - 5984168
Alignment:
| Q |
1 |
cttctcatctataaacctcacctcatggtctgcgaaagctttggcataacttccagttaggtgtcgaatttcagatggatccacatcataaaaaaccggc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||| ||||||| |||||| |||| ||||||| ||| |||| |||||||||||||| |||||||||||| |
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|
| T |
5983922 |
cttctcatctccaaacctcacctcatgttttgcaaaagcttcagcataagttcctgttaggtttcggatttgggatggatccacatcgtaaaaaaccggc |
5984021 |
T |
|
| Q |
101 |
aaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatgcatagttagtggaaaaaacaacaatga |
200 |
Q |
| |
|
|||||||||| ||||||| | | || |||||||| || |||||||||||||||||||| || ||||||||||||||||||| ||| |||| | |||||| |
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|
| T |
5984022 |
aaaaataaccttccttgtaacattgagcactcaaggatggtaacaagttcagtcaaacaaaacgttgaagatgcatagttaggggagaaaatagcaatga |
5984121 |
T |
|
| Q |
201 |
aaattttggattctttgatggcttgaagaagagtaggtgtaatttct |
247 |
Q |
| |
|
||||| | |||| ||| ||||||||||||||||||||||| |||||| |
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|
| T |
5984122 |
aaattctagattgtttaatggcttgaagaagagtaggtgtgatttct |
5984168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5906098 - 5906344
Alignment:
| Q |
1 |
cttctcatctataaacctcacctcatggtctgcgaaagctttggcataacttccagttaggtgtcgaatttcagatggatccacatcataaaaaaccggc |
100 |
Q |
| |
|
|||||||||| ||||||| |||||||| | ||| ||||||| |||||| |||| ||||||| |||||| | | ||| || ||||||||||||| |||| |
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|
| T |
5906098 |
cttctcatctctaaaccttacctcatgttttgcaaaagcttcagcataagttcccgttaggtttcgaatctgggttggttctacatcataaaaaatcggc |
5906197 |
T |
|
| Q |
101 |
aaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatgcatagttagtggaaaaaacaacaatga |
200 |
Q |
| |
|
||||| ||| ||||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||| | |||||| |
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|
| T |
5906198 |
aaaaaccaccttccttttgactttgaacactcaagaatggtaacaagttcagtcaaacaaaaagttgaagatgcatagttaggggacaaaatagcaatga |
5906297 |
T |
|
| Q |
201 |
aaattttggattctttgatggcttgaagaagagtaggtgtaatttct |
247 |
Q |
| |
|
|||| | |||||||| ||||||| ||||||||| ||||| |||||| |
|
|
| T |
5906298 |
aaatcctagattctttaatggctttaagaagagtgggtgttatttct |
5906344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 5924676 - 5924889
Alignment:
| Q |
34 |
gaaagctttggcataacttccagttaggtgtcgaatttcagatggatccacatcataaaaaaccggcaaaaataaccgtccttgtgatttggaacactca |
133 |
Q |
| |
|
|||||| | ||||||| ||||||| |||| |||||||| ||||||||||||||||||||| |||||| ||||||||| ||||||||| |||| |||||| |
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|
| T |
5924676 |
gaaagcctcggcataagttccagtcaggtatcgaatttgagatggatccacatcataaaacaccggcgaaaataaccttccttgtgacatggagcactca |
5924775 |
T |
|
| Q |
134 |
agaatagtaacaagttcagtcaaacagaaagttgaagatgcatagttagtggaaaaaacaacaatgaaaattttggattctttgatggcttgaagaagag |
233 |
Q |
| |
|
|| || || ||||||||||||||||| || ||||||||||||||||||| || |||| | |||||||||| | ||||||| |||||||||||||||| |
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|
| T |
5924776 |
aggatggtgacaagttcagtcaaacaaaacgttgaagatgcatagttaggtgagaaaatagcaatgaaaatcctagattcttcaatggcttgaagaagag |
5924875 |
T |
|
| Q |
234 |
taggtgtaatttct |
247 |
Q |
| |
|
||||||| |||||| |
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|
| T |
5924876 |
taggtgtgatttct |
5924889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 247
Target Start/End: Original strand, 4208570 - 4208744
Alignment:
| Q |
74 |
gatggatccacatcataaaa-aaccggcaaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagat |
172 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| ||||||| | || ||||||||||| || |||||||||||||||||||| |||||||||||| |
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|
| T |
4208570 |
gatggatccacatcataaaaaaaccggcaaaaacaaccttccttgtaactttgaacactcaaggatggtaacaagttcagtcaaacaaaaagttgaagat |
4208669 |
T |
|
| Q |
173 |
gcatagttagtggaaaaaacaacaatgaaaattttggattctttgatggcttgaagaagagtaggtgtaatttct |
247 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
4208670 |
gcatagttagtggaaaaaacagcaatgaaaatcctagattatttgatggcttgaagaagagtatgtgttatttct |
4208744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 17661112 - 17660982
Alignment:
| Q |
74 |
gatggatccacatcataaaaaaccggcaaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatg |
173 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || ||||| |||| |||||||| ||||| || |||||||||| ||||||| |||||||| || | |
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|
| T |
17661112 |
gatggatcgacatcataaaaaacaggcaaaagcaagcgtccatgtgtgttggaacagtcaaggatcacaacaagttcattcaaacaaaaagttgaggaag |
17661013 |
T |
|
| Q |
174 |
catagttagtggaaaaaacaacaatgaaaat |
204 |
Q |
| |
|
||||||| | || ||||||||||||||||| |
|
|
| T |
17661012 |
catagttgttagagaaaacaacaatgaaaat |
17660982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 17712153 - 17712023
Alignment:
| Q |
74 |
gatggatccacatcataaaaaaccggcaaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatg |
173 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| || ||||| |||| |||||||||||||| || | ||||||||| ||||||| ||||| || || | |
|
|
| T |
17712153 |
gatggatcgacatcataaaatacaggcaaaaacaagcgtccatgtgtgttggaacactcaaggatcatgacaagttcattcaaacaaaaagtagaggaag |
17712054 |
T |
|
| Q |
174 |
catagttagtggaaaaaacaacaatgaaaat |
204 |
Q |
| |
|
||||||| | || ||||||||||||||||| |
|
|
| T |
17712053 |
catagttgttagagaaaacaacaatgaaaat |
17712023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 17642243 - 17642113
Alignment:
| Q |
74 |
gatggatccacatcataaaaaaccggcaaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatg |
173 |
Q |
| |
|
||||| || |||||||||||||| ||||||| || ||||| |||| |||||||||||||| || |||||||| ||||||| |||||||| || | |
|
|
| T |
17642243 |
gatggttcgacatcataaaaaacgggcaaaagcaagcgtccatgtgtgttggaacactcaaggatcacggcaagttcattcaaacaaaaagttgaggaag |
17642144 |
T |
|
| Q |
174 |
catagttagtggaaaaaacaacaatgaaaat |
204 |
Q |
| |
|
||||||| | || ||||||||||||||||| |
|
|
| T |
17642143 |
catagttgttagagaaaacaacaatgaaaat |
17642113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 17650907 - 17650782
Alignment:
| Q |
74 |
gatggatccacatcataaaaaaccggcaaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatg |
173 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||| ||| |||||||||||||| || | ||||||||| |||| || |||||||| || | |
|
|
| T |
17650907 |
gatggatcgacatcataaaaaaccggcaaaagcaagcgtctacgtgtgttggaacactcaaggatcatgacaagttcattcaagcaaaaagttgatgaag |
17650808 |
T |
|
| Q |
174 |
catagttagtggaaaaaacaacaatg |
199 |
Q |
| |
|
||||||| | || |||||||||||| |
|
|
| T |
17650807 |
catagttgctagagaaaacaacaatg |
17650782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 17698941 - 17698784
Alignment:
| Q |
74 |
gatggatccacatcataaaaaaccggcaaaaataaccgtccttgtgatttggaacactcaagaatagtaacaagttcagtcaaacagaaagttgaagatg |
173 |
Q |
| |
|
|||||||| || ||||||||||||||||||| || |||| |||| |||||||| ||||| || | ||||||||| |||| || ||||| || || | |
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|
| T |
17698941 |
gatggatcgacgtcataaaaaaccggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagtagaggaag |
17698842 |
T |
|
| Q |
174 |
catagttagtggaaaaaacaacaatgaaaattttggattctttgatggcttgaagaag |
231 |
Q |
| |
|
||||||| | || |||||||||||||||||| | |||| || || ||||||||||| |
|
|
| T |
17698841 |
catagttgttagagaaaacaacaatgaaaattctagattgttgaatagcttgaagaag |
17698784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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