View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_157 (Length: 260)
Name: NF3918_low_157
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_157 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 2041529 - 2041297
Alignment:
| Q |
11 |
ttatactatatataggttaaaatccattagggttgcagtgaaaaacatatctaatacttttactcattgagtttttgttcctttgttttcgatccactgc |
110 |
Q |
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| T |
2041529 |
ttatactatatataggttaaaagccattagggttgcagtgaaaaacatatctaatacttttactcattgagtttttgttcctttgttttcgatccactgc |
2041430 |
T |
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| Q |
111 |
ttttgtttcgaaggaaacttgctattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgt |
210 |
Q |
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| T |
2041429 |
ttttgtttcgaaggaatctagctattacgatgagaagggacgaagtatctgcgagaaagaagccatcatcatcggtgcttttgtttcaaaggaatcctgt |
2041330 |
T |
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| Q |
211 |
tatgatgaaaagaaaggatcaaacacctttggt |
243 |
Q |
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| T |
2041329 |
tatgatgaaaagaaaggatcaaacacctttggt |
2041297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 1352250 - 1352360
Alignment:
| Q |
133 |
tattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
232 |
Q |
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| T |
1352250 |
tattatgatgagaagagatgaaatatctgcgagaaggaagccatcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
1352349 |
T |
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| Q |
233 |
acacctttggt |
243 |
Q |
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| T |
1352350 |
acacctttggt |
1352360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 36717295 - 36717393
Alignment:
| Q |
133 |
tattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
232 |
Q |
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||||| |||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |
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| T |
36717295 |
tattatgatgagaagggatgaaatatctgcaagaaagaagccatcgt------------tgtttcaaaggaatcctgttatgatgaagagaaaggatcaa |
36717382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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