View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_158 (Length: 260)
Name: NF3918_low_158
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_158 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 1591282 - 1591129
Alignment:
| Q |
89 |
tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
188 |
Q |
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| T |
1591282 |
tttgctatgactaaggagaagattaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
1591183 |
T |
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| Q |
189 |
cacttgctccacaattttatactcaagaagagttagcacaaataaagaaactct |
242 |
Q |
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| T |
1591182 |
cacttgctccacaattttatactcaagaagagttagcagaaataaagaaactct |
1591129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 19271077 - 19270924
Alignment:
| Q |
89 |
tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
188 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
19271077 |
tttgctatgactaaggagaagatcaacgaatacatggaaatagcgaaaacagcgccattcaaccctcaccataattttgcttggcaatgcgtcatagcta |
19270978 |
T |
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| Q |
189 |
cacttgctccacaattttatactcaagaagagttagcacaaataaagaaactct |
242 |
Q |
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| T |
19270977 |
cacttgctccccaattttatactcaagaagagttggcacaaataaagaaactct |
19270924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 39616530 - 39616382
Alignment:
| Q |
91 |
tgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagctaca |
190 |
Q |
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|||||| |||| |||||||||||||| ||||||||||| ||| ||||| |||||| |||||| || |||||| ||| ||||||||||||| ||||||| | |
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| T |
39616530 |
tgctatcactagggagaagatcaaaggatacatggaaaaagcaaaaacggcgccactcaacctttcccataactttgcttggcaatgcgtgatagctata |
39616431 |
T |
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| Q |
191 |
cttgctccacaattttatactcaagaagagttagcacaaataaagaaac |
239 |
Q |
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| T |
39616430 |
cgtgctccacaattttattctgaagaagagttaacacaaataaagaaac |
39616382 |
T |
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