View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_159 (Length: 260)
Name: NF3918_low_159
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_159 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 6842206 - 6842449
Alignment:
| Q |
12 |
aaatatgtggttcaattcataaaccatataaaaggttactgttatttttgattcagtgcagtttagtttgtcaatatagttcagttaaccatatatttgc |
111 |
Q |
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| T |
6842206 |
aaatatgtggttcaattcataaaccatataaaaggttacagttatttttgattcagtgcagtttagtttgtcaatatagttcagttaaccatatatttgc |
6842305 |
T |
|
| Q |
112 |
acccttaatgatgagggaacaatttctactaggtttaaggtgtggacgaggtccctcaaagttaatatataactcaaccacaatttataaggaatattca |
211 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
6842306 |
acacttaatgatgagggaacaatttctactaggtggaaggtgtggacgaggtccctcaaagtta--atataactc-accacaatttataaggaatattca |
6842402 |
T |
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| Q |
212 |
tgatgatttcctttattgatggagctttcatcatgatgatgtccatc |
258 |
Q |
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||||||| |||||||||||||||||||||||||| | ||| |||||| |
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| T |
6842403 |
tgatgatatcctttattgatggagctttcatcataacgatttccatc |
6842449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 26065001 - 26065101
Alignment:
| Q |
13 |
aatatgtggttcaattcataaaccatataaaaggttactgttatttttgattcagtgcagtttagtttgtcaatatagttcagttaaccatatatttgca |
112 |
Q |
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||||||||||||| ||||| |||||||||| |||||| || ||||||||| |||| |||| || | || |||| ||||| ||| ||||||||||||| |
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| T |
26065001 |
aatatgtggttcagttcatgaaccatataagtggttacaattctttttgatttagtgtagttcagatcatccatatggttcaattatccatatatttgca |
26065100 |
T |
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| Q |
113 |
c |
113 |
Q |
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| T |
26065101 |
c |
26065101 |
T |
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