View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_16 (Length: 678)
Name: NF3918_low_16
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 437 - 667
Target Start/End: Original strand, 6412961 - 6413190
Alignment:
| Q |
437 |
actcacattcaataaacgagtttgggtttgaactattatcatatcgtcggatctagtaaataccaaaatttggaagaaaaattattaattcatttcccca |
536 |
Q |
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| T |
6412961 |
actcacatacgataaacaagtttgggtttgaaccattatcatatcgtccgatctagtaaataccaaaatttggaagaaaaattattaattcatt-cccca |
6413059 |
T |
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| Q |
537 |
aaagaaaattcccttactaaccccaaattaaataataatatgaactggaatatactaaaaaataggtgtcacactcttcattgtaatttccctctactcc |
636 |
Q |
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| T |
6413060 |
aaagaaaattcccttactaaccccaaattaaataataatatgaactggaatatactaaaaaataggtgtcacactcttcattgtaatttccctctactcc |
6413159 |
T |
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| Q |
637 |
tttctttcttaaccgtcctcgccacgttcat |
667 |
Q |
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| T |
6413160 |
tttctttcttaaccgtcctcgccacgttcat |
6413190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 6412543 - 6412756
Alignment:
| Q |
19 |
agatattgataagttagagaaattttcatcactagtcatgacctaacaaggatgatcctcaacatcatatgatgtagacttaatactagcaactttggag |
118 |
Q |
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| T |
6412543 |
agatattgataagctagagaaattttcatcactagtaatgacctaacaaggatgatcctcaacatcatatgatgtagacttaatactagcaactttggag |
6412642 |
T |
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| Q |
119 |
catatactccttgcggtaagttgattaagttaattccaatcccactaataaccacttaatgtaggagaaaattgtatattcatcttcaccatgaggaata |
218 |
Q |
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| T |
6412643 |
catatactccttgcgctaagttgattaagttaattccaatcccactaataaccacttaatgtaggagaaaattgtgtattcatcttcaccatgaggaata |
6412742 |
T |
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| Q |
219 |
gaagagttcgaact |
232 |
Q |
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| T |
6412743 |
gaagagttcgaact |
6412756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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