View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_160 (Length: 260)
Name: NF3918_low_160
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_160 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 7625400 - 7625170
Alignment:
| Q |
11 |
caaaggatggtgggaattcagaatttagagatttatttgtgttcatttcaaactgtttattttcattttggtctccagatccatgttacacatccttgtc |
110 |
Q |
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| T |
7625400 |
caaaagatggtgggaattcagaatttagagatttatttgtgttaatttcaaacagtttattttcattttggtctccagatccatgttacacatccttgtc |
7625301 |
T |
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| Q |
111 |
agcatttaacggccaattttaacgtcaataattaaactggctaatggatataaacattgagggactattttacattgtatctgagtcaggactattatga |
210 |
Q |
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| T |
7625300 |
agcatttaacggccaattttaacgtcaatgattaaactggctaatggatataaacattgagggactattttacattgtatctgagtc--gactatta--a |
7625205 |
T |
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| Q |
211 |
cagtgaggtgcaaggtgaaagaccaaaatggttgt |
245 |
Q |
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| T |
7625204 |
cagtgaggtgcaaggtgaaagaccaaaatggttgt |
7625170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 9045311 - 9045403
Alignment:
| Q |
27 |
ttcagaatttagagatttatttgtgttcatttcaaactgtttattttcattttggtctccagatccatgttacacatccttgtcagcatttaa |
119 |
Q |
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| T |
9045311 |
ttcaggatttacggatttatgtgtgttaatttcatactgtttatcttcatttcggtttctagatccatgtgacacatccttgtcagcatttaa |
9045403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 29964418 - 29964485
Alignment:
| Q |
71 |
tttcattttggtctccagatccatgttacacatccttgtcagcatttaacggccaattttaacgtcaa |
138 |
Q |
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| T |
29964418 |
tttcactttagtctctagatccatgttacacatccttgtcggcatttaacggtcaattttaacgtcaa |
29964485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 30010380 - 30010313
Alignment:
| Q |
71 |
tttcattttggtctccagatccatgttacacatccttgtcagcatttaacggccaattttaacgtcaa |
138 |
Q |
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| T |
30010380 |
tttcactttagtctctagatccatgttacacatccttgtcggcatttaacggtcaattttaacgtcaa |
30010313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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