View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_162 (Length: 257)

Name: NF3918_low_162
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_162
NF3918_low_162
[»] chr6 (9 HSPs)
chr6 (106-226)||(6606529-6606650)
chr6 (104-241)||(6631660-6631798)
chr6 (109-245)||(31117674-31117811)
chr6 (1-87)||(6606455-6606541)
chr6 (106-239)||(6612982-6613116)
chr6 (147-204)||(6615655-6615712)
chr6 (140-245)||(9146105-9146210)
chr6 (217-251)||(6608506-6608540)
chr6 (106-239)||(22823472-22823606)
[»] chr4 (4 HSPs)
chr4 (131-241)||(7116451-7116560)
chr4 (130-242)||(17374011-17374123)
chr4 (134-197)||(7116811-7116870)
chr4 (172-217)||(7110376-7110421)
[»] chr8 (1 HSPs)
chr8 (129-242)||(596413-596526)
[»] scaffold0007 (1 HSPs)
scaffold0007 (139-223)||(249926-250010)
[»] chr3 (1 HSPs)
chr3 (110-197)||(27153243-27153331)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 6606529 - 6606650
Alignment:
Q  106 gttctataaattaatattgt-gcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 204  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6606529 gttctataaattaatattgttgcaagtcttgcaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 6606628  T
Q  205 cactacttgcatttgaggctag 226  Q
    ||||||||||||||||||||||    
T  6606629 cactacttgcatttgaggctag 6606650  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 6631660 - 6631798
Alignment:
Q  104 gagttctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataat 202  Q
    ||||| |||||||||| |||  ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  6631660 gagttgtataaattaagattcatgcaagttttgtaggcattgcgcatacaacaatgacagttccaaattcaattagcttaaaattttcaatactcataat 6631759  T
Q  203 cacactacttgcatttgaggctagtgatactatagctat 241  Q
    || ||||||||||||||||||||||||||||||||||||    
T  6631760 catactacttgcatttgaggctagtgatactatagctat 6631798  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 31117674 - 31117811
Alignment:
Q  109 ctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacac 207  Q
    ||||||||||| |||| || | |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||  ||||||||| ||||||  |    
T  31117674 ctataaattaagattgatgtatgtcttgtaggcattgtgcatacaacaatggcaattccaagtgcaatcaccttaaaatcatcaatactcctaatcatgc 31117773  T
Q  208 tacttgcatttgaggctagtgatactatagctattggt 245  Q
    ||||||||||||||||||| || ||||| |||||||||    
T  31117774 tacttgcatttgaggctagagagactatcgctattggt 31117811  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6606455 - 6606541
Alignment:
Q  1 aaattctatttgaacggtatttgaatttgtaaaatcattcccattgttggaagcactttattgagctgcttaatgttctataaatta 87  Q
    |||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6606455 aaattccatttcaacggtatttgaattggcaaaatcattcccattgttggaagcactttattgagctgtttaatgttctataaatta 6606541  T

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Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 6612982 - 6613116
Alignment:
Q  106 gttctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 204  Q
    ||||||||||||||||||| ||||||||  |||||||||| | ||||||||||| ||  ||||||| |||||| |||||||| |||||||||| |||  |    
T  6612982 gttctataaattaatattgatgcaagtcccgtaggcattgagtatacaacaatgacaactccaagtacaattatcttaaaatgttcaatactcctaacta 6613081  T
Q  205 cactacttgcatttgaggctagtgatactatagct 239  Q
    ||||||||||||||||||| || || |||||||||    
T  6613082 cactacttgcatttgaggccagagagactatagct 6613116  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 6615655 - 6615712
Alignment:
Q  147 catacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 204  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||| || ||||||    
T  6615655 catacaacaatggaagttacaagtccaattaccttaaaattttcaatattcttaatca 6615712  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 9146210 - 9146105
Alignment:
Q  140 cattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtgatactatagct 239  Q
    ||||||||||||||||||||||  || || | |||  |||||||||||||| || ||| |||  | ||||||||||| | ||| ||| ||||||||||||    
T  9146210 cattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaattttcgattctcctaactatactacttgcatgtaaggttagagatactatagct 9146111  T
Q  240 attggt 245  Q
     |||||    
T  9146110 tttggt 9146105  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 6608506 - 6608540
Alignment:
Q  217 ttgaggctagtgatactatagctattggtcctatg 251  Q
    |||||||||||||||| ||||||||||||||||||    
T  6608506 ttgaggctagtgataccatagctattggtcctatg 6608540  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 22823606 - 22823472
Alignment:
Q  106 gttctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 204  Q
    ||||||||||| ||| ||| || ||||||||||||  |||  |||||||||||| ||  ||| ||| ||||||  |||||||  ||||||||| |||       
T  22823606 gttctataaataaatgttgatgtaagtcttgtaggttttgaccatacaacaatgacaactcccagtacaattatattaaaatgctcaatactcctaactg 22823507  T
Q  205 cactacttgcatttgaggctagtgatactatagct 239  Q
     |||||||||||||||||| || || |||||||||    
T  22823506 tactacttgcatttgaggccagagagactatagct 22823472  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 7116560 - 7116451
Alignment:
Q  131 tcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtgat 230  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||| |||| ||||||| | |||||| ||     
T  7116560 tcttgtaggcattgtgcatacaacaatggcagttccaagtt-aattaccataaaattttcaatactactaatcatactagttgcattcgtggctagagag 7116462  T
Q  231 actatagctat 241  Q
    |||||||||||    
T  7116461 actatagctat 7116451  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 17374123 - 17374011
Alignment:
Q  130 gtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtga 229  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||| |||| |  ||||||| ||||| ||    
T  17374123 gtcttgttggcatggtgcatacaacaatggcagttccaagtacaattaccttcaaattttcgatactcctaatcatactattctcatttgaagctagaga 17374024  T
Q  230 tactatagctatt 242  Q
     ||||||||||||    
T  17374023 aactatagctatt 17374011  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 7116870 - 7116811
Alignment:
Q  134 tgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactc 197  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||||| |||||||    
T  7116870 tgtaggcattgtgcatacaa---tggcagttccaagttcaaatacctt-aaattttaaatactc 7116811  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 7110421 - 7110376
Alignment:
Q  172 caattaccttaaaattttcaatactcataatcacactacttgcatt 217  Q
    |||||| |||||| |||||||||||| |||||| ||||||||||||    
T  7110421 caattatcttaaagttttcaatactcttaatcatactacttgcatt 7110376  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 596526 - 596413
Alignment:
Q  129 agtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtg 228  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||| || |||||| |||||| |||| |  ||||||| ||||| |    
T  596526 agtcttgttggcatggtgcatacaacaatggcagttccaagtacaattaccttcaaattatcgatactcctaatcatactattctcatttgaagctagag 596427  T
Q  229 atactatagctatt 242  Q
    | ||||||||||||    
T  596426 aaactatagctatt 596413  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 249926 - 250010
Alignment:
Q  139 gcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggc 223  Q
    |||||||||||||||||||||||| | |||||||| || |||||||||| |||||| |  | || | | ||||||||||||||||    
T  249926 gcattgtgcatacaacaatggcagcttcaagttcagttgccttaaaattctcaatattgctgattatattacttgcatttgaggc 250010  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 27153243 - 27153331
Alignment:
Q  110 tataaattaatatt-gtgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactc 197  Q
    |||||||||| ||| ||| |||| ||||||||||||  | ||||||||||||||   ||| | | |||| |||||||||||||||||||    
T  27153243 tataaattaagattagtgtaagttttgtaggcattgcacttacaacaatggcagcatcaaatccgattatcttaaaattttcaatactc 27153331  T

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