View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_low_163 (Length: 254)
Name: NF3918_low_163
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_163 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 62 - 240
Target Start/End: Complemental strand, 34325599 - 34325421
Alignment:
| Q |
62 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34325599 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
34325500 |
T |
|
| Q |
162 |
ttcctcaaccatgcgtgtacttaaatcatagcagactattttttcatcttcttttttgaaaaatatatcaccattcctc |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
34325499 |
ttcctcaaccatgtgtgtacttaaatcatagcagactattttttcatcttttttttcgaaaaatatatcaccattcctc |
34325421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 29352218 - 29352399
Alignment:
| Q |
62 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
161 |
Q |
| |
|
||||||| ||||||||||||||||||||| | | |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29352218 |
cttagtttagaacaagaaaaccaactaatctgttattggatttgtcaaaccactctttcttgtaaattattctatttgatggtgcttcttcaagaccaag |
29352317 |
T |
|
| Q |
162 |
t---tcctcaaccatgcgtgtacttaaatcatagcagactattttttcatcttcttttttgaaa-aatatatcaccattcctc |
240 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
29352318 |
ttcctcctcaaccatgcgtgtacttaaatcatagcagactatttttttatctt-ttttttgaaagaatatatcaccattcctc |
29352399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34326493 - 34326431
Alignment:
| Q |
1 |
cataccaaagccgcagcacccgcgtaacagaccccaaaaaccaccattaccgcaccagacact |
63 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34326493 |
cataccaaagccgcagcacccacgtaacagaccccaaaaaccaccattaccgcaccagacact |
34326431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 62 - 248
Target Start/End: Complemental strand, 4028192 - 4028006
Alignment:
| Q |
62 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028192 |
cttagttgagaacaagaaaaccaactaatgatttactggaattgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
4028093 |
T |
|
| Q |
162 |
ttcctcaaccatgcgtgtacttaaatcatagcagactattttttcatcttcttttttgaaaaatatatcaccattcctctctgctcc |
248 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
4028092 |
ttcctcaaccatgtgtgtgcttaaatcatagcagactatttttttacctttttttttgaagaatatatcaccattcctccctgctcc |
4028006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4028569 - 4028507
Alignment:
| Q |
1 |
cataccaaagccgcagcacccgcgtaacagaccccaaaaaccaccattaccgcaccagacact |
63 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028569 |
cataccaaagccgcagcacccgcataacagaccccaaaaaccaccattaccgcaccagacact |
4028507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 30250097 - 30249919
Alignment:
| Q |
62 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
161 |
Q |
| |
|
||||||||| |||||||||||||||||||| | | ||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||| || |
|
|
| T |
30250097 |
cttagttgaaaacaagaaaaccaactaatgtgtgatccaattcgataaaccactttttcttgtaagttattctatttgatggtggttcttcaagactgat |
30249998 |
T |
|
| Q |
162 |
ttcctcaaccatgcgtgtacttaaatcatagcagactattttttcatc--ttctttttt-gaaaaatatatcaccattc |
237 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||| |||| || |||||| ||| ||||||||||||||| |
|
|
| T |
30249997 |
ttcctcaaacatgtgtgtacttaaatcatagcagactaattttccatcgtttattttttcgaagaatatatcaccattc |
30249919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University