View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_17 (Length: 673)
Name: NF3918_low_17
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 62 - 654
Target Start/End: Complemental strand, 38924057 - 38923480
Alignment:
| Q |
62 |
ttgtgatggtgaggaggtggaaaatccttgtaggggtgtagatagcaatatagttgaagaagaactctttggattttttctgccaatccattttgtgtag |
161 |
Q |
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| T |
38924057 |
ttgtgatggtgaggaggtggaaaatccttgtaggggtgtagatagcaatatagttgaagaagaactctttggattttttctgccaatccattttgtgtag |
38923958 |
T |
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| Q |
162 |
aatgaaaccaattagtgttgaattgaagaaacacgttgttctttatttacaagctaagggaagttcaagattaagtaaaggtgtttctttatgtatgtga |
261 |
Q |
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| T |
38923957 |
aatgaaaacaattagtgttgaattgaagaaacacgttgttctttatttacaagctaagggaagttcaagattaagtaaaggtgtttctttatgtatgtga |
38923858 |
T |
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| Q |
262 |
cttgacaactattttttatg-aatgaaatttagtaagtggttaccacgtccattggttacttagttgacattttataggacatggtgttgattctttata |
360 |
Q |
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| T |
38923857 |
cttgacaactattttttatgaaatgaaatttaataagtggttaccacgtccattggttacttagttgacattttataggacatggtgttgattctttata |
38923758 |
T |
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| Q |
361 |
tctctataataatagtatttaatttagctcaatctccaccaattcgtgttagtttatcattgtcacattggtttggtacgnnnnnnnngaatatattggc |
460 |
Q |
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| T |
38923757 |
tctctataataatagtatttaatttagctcaatctcaa------cgt---------ccattgtcacattggtttggtacgaaaaaaaagaatatattggc |
38923673 |
T |
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| Q |
461 |
atggtttgaattttgaataatgaggatgtttaattgggtgccaaatttaattgatgagagtggaaacagtttgaaattttgagcaaacctctttggctgt |
560 |
Q |
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| T |
38923672 |
atggtttgaattttgaataatgcggatgtttaattgggtgccaaatttaattgatgagagtggaaacagttcgaaattttgaggaaacctctttggctgt |
38923573 |
T |
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| Q |
561 |
tcactcgctcttcgttgaccaaacatcattgaatttattttgtctgcattagaaaatgaattgtgttatttaatcacaaattagataacgcatg |
654 |
Q |
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| T |
38923572 |
tcactcgctcttcgttgacgaaacatcattgaattta-tttgtctgcattagaaaatgaattgtgttatttaaccacaaattagataacgcatg |
38923480 |
T |
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