View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_172 (Length: 250)
Name: NF3918_low_172
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_172 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 27645503 - 27645742
Alignment:
| Q |
11 |
caaaggagatatgcttcccatctcactctaacggtagcaaagttccattgtcaaccgaaacagccactagtgtcctcaaatacaaaacaagtcacttgct |
110 |
Q |
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| T |
27645503 |
caaaggagatatgcttcccatctcactctaacggtagcaaagttccattgtcaaccgaaacagccactagtgtcctcaaacacaaaacaagtcacttgct |
27645602 |
T |
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| Q |
111 |
tgccttaacttgttaaagacaaaaacccgcatcgacaatcttcagttagagaacaacagttctttccgaaaacaaactagtcaacccttctccagcaaaa |
210 |
Q |
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| T |
27645603 |
tgccttaacttgttaaagacaaaaacccgcaccgacaatcttcagttagagaacaacagttctttccgaaaacaaactagtcaacccttctctagcaaaa |
27645702 |
T |
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| Q |
211 |
tgtgatctagtgtatgtgatcgtctatgtttatttaatcc |
250 |
Q |
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| T |
27645703 |
tgtgatctagtgtatgtgatcgtatatgtttatttaatcc |
27645742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 27647658 - 27647857
Alignment:
| Q |
13 |
aaggagatatgcttcccatctcactctaacggtagcaaagttccattgtcaaccgaaacagccactagtgtcctcaaatacaaaacaagtcacttgcttg |
112 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
27647658 |
aaggagatatgcttcccatctcactttaacggtggcaaagttccattgtcaaccgaaacagccactagtgttctcaaacacaaaacaagtcacttgcttg |
27647757 |
T |
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| Q |
113 |
ccttaacttgttaaagacaaaaacccgcatcgacaatcttcagttagagaacaacagttctttccgaaaacaaactagtcaacccttctccagcaaaatg |
212 |
Q |
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| T |
27647758 |
tcttaacttgttaaagacaaaaacccgcacggacagtcttcagttagagaacaacagttcattccggaaacaaactagtcaacccttgtccagcaaaatg |
27647857 |
T |
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