View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_18 (Length: 631)

Name: NF3918_low_18
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_18
NF3918_low_18
[»] chr2 (18 HSPs)
chr2 (265-616)||(14223455-14223810)
chr2 (113-266)||(19437542-19437697)
chr2 (117-266)||(25445068-25445219)
chr2 (113-265)||(19443117-19443271)
chr2 (113-265)||(25454722-25454876)
chr2 (141-266)||(24053323-24053448)
chr2 (142-265)||(43293174-43293297)
chr2 (141-266)||(43287428-43287553)
chr2 (141-266)||(24056659-24056783)
chr2 (143-265)||(31437151-31437273)
chr2 (10-75)||(19443017-19443082)
chr2 (143-265)||(31433045-31433167)
chr2 (38-85)||(43293066-43293113)
chr2 (32-85)||(25454645-25454698)
chr2 (1-75)||(24056517-24056592)
chr2 (143-246)||(8872259-8872362)
chr2 (51-85)||(25445002-25445036)
chr2 (51-85)||(43287334-43287368)
[»] chr8 (18 HSPs)
chr8 (3-265)||(30727495-30727759)
chr8 (113-266)||(30714220-30714375)
chr8 (113-266)||(30721997-30722152)
chr8 (140-266)||(21247675-21247800)
chr8 (140-266)||(27679659-27679784)
chr8 (140-266)||(37204234-37204359)
chr8 (140-266)||(37209711-37209836)
chr8 (140-265)||(21241172-21241296)
chr8 (140-265)||(27683441-27683565)
chr8 (159-266)||(26196895-26197002)
chr8 (143-256)||(24042891-24043004)
chr8 (1-75)||(21241350-21241424)
chr8 (181-265)||(26197005-26197089)
chr8 (1-61)||(27682602-27682662)
chr8 (21-75)||(37204415-37204469)
chr8 (51-85)||(30714158-30714192)
chr8 (51-85)||(30721935-30721969)
chr8 (38-75)||(27683350-27683387)
[»] chr1 (27 HSPs)
chr1 (3-265)||(31099448-31099712)
chr1 (32-265)||(18540629-18540864)
chr1 (113-266)||(18534984-18535139)
chr1 (113-266)||(31092952-31093107)
chr1 (110-266)||(11660176-11660334)
chr1 (141-265)||(27347202-27347326)
chr1 (141-266)||(37356768-37356893)
chr1 (119-266)||(38991098-38991244)
chr1 (119-265)||(38984912-38985057)
chr1 (141-266)||(28519274-28519398)
chr1 (113-265)||(11654020-11654174)
chr1 (141-266)||(37365186-37365311)
chr1 (141-265)||(35625287-35625411)
chr1 (119-265)||(7876091-7876239)
chr1 (141-266)||(28512811-28512933)
chr1 (143-265)||(38736039-38736161)
chr1 (1-265)||(39492740-39493006)
chr1 (1-75)||(7876267-7876341)
chr1 (1-75)||(28512988-28513062)
chr1 (1-75)||(38985090-38985164)
chr1 (42-85)||(11654202-11654245)
chr1 (1-75)||(37365044-37365119)
chr1 (51-85)||(11660359-11660393)
chr1 (51-85)||(27347108-27347142)
chr1 (53-85)||(18534924-18534956)
chr1 (50-85)||(31092889-31092924)
chr1 (1-41)||(39494333-39494373)
[»] chr5 (14 HSPs)
chr5 (113-265)||(23058959-23059113)
chr5 (113-265)||(39653932-39654086)
chr5 (117-266)||(21171196-21171347)
chr5 (113-266)||(23053384-23053539)
chr5 (113-266)||(35264545-35264700)
chr5 (113-265)||(35270286-35270440)
chr5 (117-266)||(16675563-16675711)
chr5 (142-266)||(25365430-25365554)
chr5 (117-266)||(21178057-21178210)
chr5 (1-75)||(21177943-21178017)
chr5 (10-75)||(23058859-23058924)
chr5 (32-85)||(35270205-35270258)
chr5 (53-85)||(39653872-39653904)
chr5 (1-55)||(29120884-29120939)
[»] chr4 (38 HSPs)
chr4 (113-265)||(30679797-30679951)
chr4 (113-266)||(25687563-25687718)
chr4 (113-266)||(30673704-30673859)
chr4 (119-266)||(18890001-18890150)
chr4 (110-265)||(1913733-1913892)
chr4 (113-263)||(25697331-25697483)
chr4 (116-267)||(23187961-23188114)
chr4 (113-266)||(910852-911006)
chr4 (117-266)||(1874001-1874152)
chr4 (119-266)||(12435360-12435506)
chr4 (119-265)||(42404643-42404788)
chr4 (140-266)||(42411106-42411231)
chr4 (21-263)||(12439205-12439449)
chr4 (141-266)||(16325753-16325878)
chr4 (141-265)||(16334797-16334921)
chr4 (110-266)||(12659191-12659351)
chr4 (140-266)||(23200525-23200651)
chr4 (119-266)||(29333636-29333782)
chr4 (140-265)||(917323-917447)
chr4 (145-266)||(12428922-12429043)
chr4 (143-266)||(4393790-4393913)
chr4 (141-265)||(55325479-55325606)
chr4 (1-75)||(42404821-42404895)
chr4 (152-265)||(48305386-48305499)
chr4 (151-261)||(12665747-12665859)
chr4 (1-75)||(917194-917268)
chr4 (172-265)||(42119802-42119895)
chr4 (1-75)||(12435253-12435327)
chr4 (1-71)||(30679688-30679758)
chr4 (141-265)||(33360217-33360341)
chr4 (32-85)||(25697251-25697303)
chr4 (21-75)||(48305270-48305324)
chr4 (33-85)||(1913656-1913708)
chr4 (45-85)||(23188145-23188185)
chr4 (51-85)||(12428826-12428860)
chr4 (51-85)||(25687501-25687535)
chr4 (40-85)||(33360114-33360158)
chr4 (39-75)||(12665641-12665677)
[»] chr3 (20 HSPs)
chr3 (119-265)||(2982190-2982338)
chr3 (119-266)||(2978246-2978395)
chr3 (141-268)||(15758327-15758454)
chr3 (110-265)||(49491221-49491380)
chr3 (141-266)||(49486759-49486884)
chr3 (141-265)||(15752534-15752658)
chr3 (142-266)||(21453159-21453283)
chr3 (142-266)||(21458333-21458457)
chr3 (142-265)||(21877164-21877287)
chr3 (142-266)||(21883423-21883547)
chr3 (141-266)||(21477491-21477615)
chr3 (141-265)||(21473104-21473228)
chr3 (1-75)||(15758186-15758260)
chr3 (3-75)||(21473295-21473367)
chr3 (32-85)||(21453341-21453394)
chr3 (32-75)||(49491161-49491204)
chr3 (21-75)||(2982095-2982149)
chr3 (31-75)||(21877359-21877403)
chr3 (51-85)||(21458515-21458549)
chr3 (53-85)||(49486670-49486702)
[»] chr7 (16 HSPs)
chr7 (117-266)||(8248109-8248260)
chr7 (117-265)||(8242541-8242691)
chr7 (114-265)||(29176544-29176697)
chr7 (114-256)||(29185532-29185676)
chr7 (140-266)||(22822536-22822661)
chr7 (140-265)||(22826840-22826964)
chr7 (142-266)||(340329-340453)
chr7 (142-265)||(346563-346686)
chr7 (141-266)||(25830424-25830548)
chr7 (10-75)||(22822717-22822782)
chr7 (3-75)||(8242731-8242803)
chr7 (1-73)||(29176735-29176807)
chr7 (165-265)||(2068782-2068882)
chr7 (21-75)||(22827020-22827074)
chr7 (29-75)||(346455-346501)
chr7 (158-262)||(31904627-31904731)
[»] scaffold0102 (2 HSPs)
scaffold0102 (113-266)||(14024-14179)
scaffold0102 (51-85)||(14207-14241)
[»] chr6 (6 HSPs)
chr6 (141-265)||(18738573-18738697)
chr6 (140-266)||(23427481-23427606)
chr6 (141-265)||(33660928-33661052)
chr6 (140-265)||(23421636-23421760)
chr6 (1-73)||(23421816-23421888)
chr6 (51-85)||(18738755-18738789)
[»] scaffold0014 (3 HSPs)
scaffold0014 (141-266)||(111874-111999)
scaffold0014 (216-265)||(106062-106111)
scaffold0014 (33-85)||(106176-106228)
[»] scaffold0079 (1 HSPs)
scaffold0079 (141-265)||(57939-58063)
[»] scaffold0591 (2 HSPs)
scaffold0591 (142-265)||(9323-9446)
scaffold0591 (29-75)||(9509-9555)
[»] scaffold0258 (2 HSPs)
scaffold0258 (145-263)||(6317-6435)
scaffold0258 (36-85)||(6206-6255)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 265 - 616
Target Start/End: Complemental strand, 14223810 - 14223455
Alignment:
Q  265 acactcgtgtttatgttaattattttatatnnnnnnngttccaaaggaaggaataagccaaagtaatcaaacagtactcaaaaggactttcctcctggtg 364  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223810 acactcgtgtttatgttaattattttatataaaaaaagttccaaaggaaggaataagccaaagtaatcaaacagtactcaaaaggactttcctcctggtg 14223711  T
Q  365 tttgtcaagtcgaaccgaactatatggataagacagttttggacttttagtgaacaccccaaatctctagtagaaaaacaaaagattttacatgatttgt 464  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14223710 tttgtcatgtcgaaccgaactatatggctaagacagttttggacttttagtgaactccccaaatctctagtagaaaaacaaaagattttacatgatttgt 14223611  T
Q  465 caaacat----gtttatgcaagtataaaaacaagaatgaaattcaatagaatgacaagtatagggaaacacatgatgttgtttgttcgttagaaagctca 560  Q
    |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223610 caaacatgtttgtttatgcaagtataaaaacaagaatgaaattcaatagaatgacaagtatagggaaacacatgatgttgtttgttcgttagaaagctca 14223511  T
Q  561 ggggccctgagtcagggcaaagcattttattgattttgtctccttgctgacttttt 616  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223510 gggaccctgagtcagggcaaagcattttattgattttgtctccttgctgacttttt 14223455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 19437542 - 19437697
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||   ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19437542 gagcagtattcttattcactaatgtgtgtctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagta 19437641  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19437642 gtatggcccactaacacatttgctatttggacatccactattaatatttataacac 19437697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 25445068 - 25445219
Alignment:
Q  117 agtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatat 214  Q
    |||||||||||||||  || |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  25445068 agtattcttattcactgatgtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagtagtat 25445167  T
Q  215 ggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25445168 ggcccattaacacatttgctatttggacatccactattaatatttataacac 25445219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 19443117 - 19443271
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||   ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  19443117 gagcagtattcttattcactaatgtgtgtctcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaattaagcccaataacctagta 19443216  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19443217 gtatggcccactaacacatttgctatttggacatccactattaatatttataaca 19443271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 25454722 - 25454876
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    ||||||||||||||||||   || |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  25454722 gagcagtattcttattcaatgatgtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagctcaataacctagta 25454821  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25454822 gtatggcccactaacacatttgctatttggacattcactattaatatttataaca 25454876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 24053323 - 24053448
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||| ||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  24053323 tcaatattacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 24053422  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  24053423 acatccactattaatatttataacac 24053448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 43293174 - 43293297
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  43293174 caatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgga 43293273  T
Q  242 catccactattaatatttataaca 265  Q
    |||||||||||||| |||||||||    
T  43293274 catccactattaatgtttataaca 43293297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 43287428 - 43287553
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  43287428 tcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 43287527  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||| ||||||||| ||||||||||    
T  43287528 acatctactattaatgtttataacac 43287553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 24056659 - 24056783
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||||||| ||||| ||| ||||||||||||||| |||    
T  24056659 tcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagtccaataacctagtagtatgg-ccaataacacatttgctatctgg 24056757  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  24056758 acatccactattaatatttataacac 24056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 31437273 - 31437151
Alignment:
Q  143 aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggac 242  Q
    ||||||| |||||| || |||||||||| ||||| ||||||||||||| |||||||||||||  |||| ||||| ||| |||| |||||| | |||||||    
T  31437273 aatgttacaaatgaactttatttataggaaaatagagtagcttatgaactaagcccaataacacagtattatggtccattaactcatttgttgtttggac 31437174  T
Q  243 atccactattaatatttataaca 265  Q
    |||||||||||||||||||||||    
T  31437173 atccactattaatatttataaca 31437151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 19443017 - 19443082
Alignment:
Q  10 tatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  19443017 tatattaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 19443082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 31433167 - 31433045
Alignment:
Q  143 aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggac 242  Q
    ||||||| |||||| |  |||||||||||||||| | || |||||||| ||||| |||||| |||||   |||  ||| ||||  |||||||||||||||    
T  31433167 aatgttacaaatgaacattatttatagggaaatagaatatcttatgaactaagctcaataaactagttgcatgctccattaactaatttgctatttggac 31433068  T
Q  243 atccactattaatatttataaca 265  Q
    |||||||||||||||||||||||    
T  31433067 atccactattaatatttataaca 31433045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 43293066 - 43293113
Alignment:
Q  38 cgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43293066 cgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 43293113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 25454645 - 25454698
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25454645 ttagggcgtgctgataacgtgttataaatacaagtaaatagagatgataataat 25454698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24056517 - 24056592
Alignment:
Q  1 gaaatatattatactaataccttttcagt-gattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| ||||||||||||  |||| ||| | |||||||||||||||||||||||||||| | |||||||||||||    
T  24056517 gaaatagattatactaatagattttaagttggttagagcgtgctgataacgtgttatgaaaataagtaaatagaga 24056592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 8872362 - 8872259
Alignment:
Q  143 aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggac 242  Q
    ||||||| |||||| ||||||||||||||||||| |||||| |||  | |||||||||||| | | || ||||||| | |||| |||||| ||| ||||     
T  8872362 aatgttacaaatgaactctatttatagggaaatatagtagcctatagactaagcccaataatcaaatagtatggcctattaacccatttgatatatggat 8872263  T
Q  243 atcc 246  Q
    ||||    
T  8872262 atcc 8872259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 25445002 - 25445036
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||| ||||||||||||||||||||||||||||    
T  25445002 tgttataaatacaagtaaatagagatgataataat 25445036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 43287334 - 43287368
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||| |||||||||||||||||||||    
T  43287334 tgttatgaatacaggtaaatagagatgataataat 43287368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 8e-72; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 30727495 - 30727759
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnnnn 102  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                     
T  30727495 aatatattatatgaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatggtaataatagagagaatgagaagaa 30727594  T
Q  103 nnnnnnntatgagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaa 200  Q
           || |||||||||||||||||||  || |||| |||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  30727595 gagagaataggagcagtattcttattcactgatgtgtatatcaatgttacaaatgagctctatttttaggaaaatatagtagcttatgaattaagcccaa 30727694  T
Q  201 taacctagtaatatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30727695 taacctagtagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 30727759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 30714220 - 30714375
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30714220 gagcagtattcttattcactgatgtgtatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagta 30714319  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30714320 gtatggcccactaacacaattgctatttggacatccactattaatatttataacac 30714375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 30721997 - 30722152
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30721997 gagcagtattcttattcactgatgtgtatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagta 30722096  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30722097 gtatggcccactaacacaattgctatttggacatccactattaatatttataacac 30722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 21247800 - 21247675
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  21247800 atcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggtccactaacacatttgctatttg 21247702  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||||| ||||||||||||||||||    
T  21247701 gacatccaatattaatatttataacac 21247675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 27679659 - 27679784
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  27679659 atcaatgttacaaattagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcccactaacacatttgctatttg 27679757  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||||| ||||||||||||||||||    
T  27679758 gacatccaatattaatatttataacac 27679784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 37204359 - 37204234
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  37204359 atcaatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaa-aacctagtagtatggcccactaacacatttgctatttg 37204261  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||||| ||||||||||||||||||    
T  37204260 gacatccaatattaatatttataacac 37204234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 37209836 - 37209711
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  37209836 atcaatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaa-aacctagtagtatggcccactaacacatttgctatttg 37209738  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||||| ||||||||||||||||||    
T  37209737 gacatccaatattaatatttataacac 37209711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 21241296 - 21241172
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  21241296 atcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggtccactaacacatttgctatttg 21241198  T
Q  240 gacatccactattaatatttataaca 265  Q
    |||||||| |||||||||||||||||    
T  21241197 gacatccaatattaatatttataaca 21241172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 27683441 - 27683565
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  27683441 atcaatgttacaaatgagctctatttatagggaaatagagtaacttatgaactaaacccaa-aacctagtagtatggcccactaacacatttgctatttg 27683539  T
Q  240 gacatccactattaatatttataaca 265  Q
    |||||||| |||||||||||||||||    
T  27683540 gacatccaatattaatatttataaca 27683565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 26197002 - 26196895
Alignment:
Q  159 tctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacatccactattaatatt 258  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||  |||  |||||||||||| ||||||||||||||||||    
T  26197002 tctatttatagggaaatagagtagcttatgaactaagcccaataacctattagtatggcccataaacctatttgctatttgaacatccactattaatatt 26196903  T
Q  259 tataacac 266  Q
    ||||||||    
T  26196902 tataacac 26196895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 24042891 - 24043004
Alignment:
Q  143 aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggac 242  Q
    ||||||| | ||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||| || ||||||||| ||||||||||| |||||||||    
T  24042891 aatgttacatatgagctctatttatagagaaatagagtagcttatgaactaagcccaataatctaatattatggcccattaacacatttgttatttggac 24042990  T
Q  243 atccactattaata 256  Q
    | |||| |||||||    
T  24042991 acccacaattaata 24043004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21241424 - 21241350
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  21241424 gaaatatattatattaataccttttcggtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 21241350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 26197005 - 26197089
Alignment:
Q  181 agcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    |||||||||| |||||||||||||||| || ||||||| |  |||  ||||||||||||||||||||||||||||||||||||||    
T  26197005 agcttatgaactaagcccaataacctattagtatggcctataaacctatttgctatttggacatccactattaatatttataaca 26197089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27682662 - 27682602
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaata 61  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  27682662 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaata 27682602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 37204469 - 37204415
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37204469 cttttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 37204415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 30714158 - 30714192
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| |||||||    
T  30714158 tgttatgaatacaagtaaatagagatggtaataat 30714192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 30721935 - 30721969
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| |||||||    
T  30721935 tgttatgaatacaagtaaatagagatggtaataat 30721969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 27683350 - 27683387
Alignment:
Q  38 cgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  27683350 cgtgctgataacttgttatgaatataagtaaatagaga 27683387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 8e-72; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 31099448 - 31099712
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnnnn 102  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                     
T  31099448 aatatattatatgaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaacagagatgataataatagagagaaggagaagaa 31099547  T
Q  103 nnnnnnntatgagcagtattcttattcacatatgtacat--caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaa 200  Q
           || |||||||||| ||||||||  ||||| ||  |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31099548 gagagaataagagcagtatttttattcactgatgtatatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaa 31099647  T
Q  201 taacctagtaatatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31099648 taacctagtagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 31099712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 18540629 - 18540864
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnnnnnnnnnnntatgagcagtattcttattcac 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                        || |||||||||||||||||||    
T  18540629 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatagagagaaggagaagaagagaaaataggagcagtattcttattcac 18540728  T
Q  132 --atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacat 229  Q
      || |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  18540729 tgatctgtatatcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccactaacacat 18540828  T
Q  230 ttgctatttggacatccactattaatatttataaca 265  Q
    ||||||||||||||||||||||||||||||||||||    
T  18540829 ttgctatttggacatccactattaatatttataaca 18540864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 18534984 - 18535139
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  18534984 gagcagtattcttattcactgatctgtatatcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaataacctagta 18535083  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18535084 gtatggcccactaacacatttgctatttggacatccactattaatatttataacac 18535139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 31092952 - 31093107
Alignment:
Q  113 gagcagtattcttattcacatatgtacat--caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||| ||||||||  ||||| ||  |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31092952 gagcagtatttttattcactgatgtatatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagta 31093051  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31093052 gtatggcccactaacacatttgctatttggacatccactattaatatttataacac 31093107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 110 - 266
Target Start/End: Complemental strand, 11660334 - 11660176
Alignment:
Q  110 tatgagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataaccta 207  Q
    ||||||||||||||||||||||  || |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  11660334 tatgagcagtattcttattcactgatgtgtatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacata 11660235  T
Q  208 gtaatatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  11660234 gtagtatggcccactaacacatttgttacttggacatccactattaatatttataacac 11660176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 27347202 - 27347326
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  27347202 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagtagtatggctcaataacacatttgctatttgg 27347301  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  27347302 acatccactattaatatttataaca 27347326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 37356768 - 37356893
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  37356768 tcaatgttataaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 37356867  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  37356868 acatccactattaatatttataacac 37356893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 38991244 - 38991098
Alignment:
Q  119 tattcttattcacatatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcc 218  Q
    |||||||||||||   |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||    
T  38991244 tattcttattcactagtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcc 38991146  T
Q  219 cactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38991145 cactaacacatttgctatttggacatccaatattaatatttataacac 38991098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 38985057 - 38984912
Alignment:
Q  119 tattcttattcacatatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcc 218  Q
    |||||||||||||   |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||    
T  38985057 tattcttattcactagtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcc 38984959  T
Q  219 cactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  38984958 cactaacacatttgctatttggacatccaatattaatatttataaca 38984912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 28519398 - 28519274
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  28519398 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcccactaacacatttgctatttgg 28519300  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||| ||||||||||||||||||    
T  28519299 acatccaatattaatatttataacac 28519274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 113 - 265
Target Start/End: Complemental strand, 11654174 - 11654020
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    ||||||||||||||||||   || |||| |||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  11654174 gagcagtattcttattcattgatgtgtatatcaatgttacaaatgaactctatttatagggaaatagaatagcttatgaattaagcccaataacatagta 11654075  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  11654074 gtatgatccactaacacatttgctatttggatatccactattaatatttataaca 11654020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 37365186 - 37365311
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  37365186 tcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagtatggtccaataacacatttgctatttgg 37365285  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  37365286 acatccactattaatatttataacac 37365311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 35625287 - 35625411
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  35625287 tcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataatctagtagtatggcccaataacacatttgctatttgg 35625386  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  35625387 acatccactattaatatttataaca 35625411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 7876239 - 7876091
Alignment:
Q  119 tattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatgg 216  Q
    |||||||||||||  || ||||  ||||||||| |||||||||||||||||||||||||| ||||||||| ||| |||||| |||||||||||| |||||    
T  7876239 tattcttattcactaatgtgtatctcaatgttacaaatgagctctatttatagggaaatatagtagcttacgaactaagcctaataacctagtagtatgg 7876140  T
Q  217 cccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  7876139 tccactaacacatttgttatttggacattcactattaatatttataaca 7876091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 28512933 - 28512811
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||  |||||    
T  28512933 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcccactaacacatttgc--tttgg 28512837  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||| ||||||||||||||||||    
T  28512836 acatccaatattaatatttataacac 28512811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 38736161 - 38736039
Alignment:
Q  143 aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggac 242  Q
    ||||||| |||||| ||||||||||| | ||||| ||||||||||||| |||||||||||||||| || ||||||||| ||||| |||| ||||||||||    
T  38736161 aatgttacaaatgaactctatttataagaaaatagagtagcttatgaactaagcccaataacctaatagtatggcccaataacatattttctatttggac 38736062  T
Q  243 atccactattaatatttataaca 265  Q
    | |||||||||||||||||||||    
T  38736061 aaccactattaatatttataaca 38736039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 39493006 - 39492740
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnn 100  Q
    ||||||||||| |  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                   
T  39493006 gaaatatattacatgaatacattttcagtgattagagcatgctgataacgtgttatgaatacaagtaaatagagatgataataatagagagaaggagaag 39492907  T
Q  101 nnnnnnnnntatgagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagccc 198  Q
             ||||||||||||||||||||||  |||| ||  ||| | ||| ||||||  | ||||||||| |||||| ||||| ||||  | |||||||    
T  39492906 aagagagaatatgagcagtattcttattcactgatatatatctcactcttacaaatgaattttatttatagagaaatagagtagtttatagactaagccc 39492807  T
Q  199 aataacctagtaatatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    ||||| ||| || |||||| ||  |||  ||||||||||||||||||||||||||||||||||||||    
T  39492806 aataatctattagtatggctcataaacctatttgctatttggacatccactattaatatttataaca 39492740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7876341 - 7876267
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7876341 gaaatatattatattaatacattttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 7876267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 28513062 - 28512988
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28513062 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 28512988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38985164 - 38985090
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38985164 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 38985090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 11654245 - 11654202
Alignment:
Q  42 ctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11654245 ctgataacgtgttatgaatacaagtaaatagagatgataataat 11654202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37365044 - 37365119
Alignment:
Q  1 gaaatatattatactaataccttttcagt-gattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| ||||||||||||  |||||||| | |||||||||||||||||||||||||||| | |||||||||||||    
T  37365044 gaaatagattatactaatagattttcagttggttagagcgtgctgataacgtgttatgaaaataagtaaatagaga 37365119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 11660393 - 11660359
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  11660393 tgttatgaatacaagtaaatagagatgataataat 11660359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 27347108 - 27347142
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  27347108 tgttatgaatacaagtaaatagagatgataataat 27347142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 18534924 - 18534956
Alignment:
Q  53 ttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||    
T  18534924 ttatgaatacaagtaaatagagatgataataat 18534956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 31092889 - 31092924
Alignment:
Q  50 gtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||| |||||||||||||||    
T  31092889 gtgttatgaatacaagtaaacagagatgataataat 31092924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39494333 - 39494373
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtg 41  Q
    |||||||||||||  |||| |||||||||||||||||||||    
T  39494333 gaaatatattatatgaatatcttttcagtgattagagcgtg 39494373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 23058959 - 23059113
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||   ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23058959 gagcagtattcttattcactaatgtgtgtctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagta 23059058  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23059059 gtatggcccactaacacatttgctatttggacatccactattaatatttataaca 23059113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 39653932 - 39654086
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  39653932 gagcagtattcttattcactgatgtgtatatcaatgttataaatgagctctatttataaggaaatatagtagcttatgaattaagcccaataacctagta 39654031  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39654032 gtatggtccactaacacatttgttatttggacatccactattaatatttataaca 39654086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 21171196 - 21171347
Alignment:
Q  117 agtattcttattcacatatgtacatc--aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatat 214  Q
    ||||||||||||||| |||||  |||  ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  21171196 agtattcttattcacttatgtgtatctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctagtagtat 21171295  T
Q  215 ggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21171296 ggcccactaacacatttgccatttggacatccactattaatatttataacac 21171347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 23053384 - 23053539
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||   ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  23053384 gagcagtattcttattcactaatgtgtgtctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagctcaataacctagta 23053483  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23053484 gtatggcccactaacacatttgctatttggacatccactattaatatttataacac 23053539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 35264545 - 35264700
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || ||||  ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||    
T  35264545 gagcagtattcttattcactgatgtgtatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagcccaataacctaata 35264644  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35264645 gtatggcccactaacacatttgctatttggacatccactattaatatttataacac 35264700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 35270286 - 35270440
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || ||||  ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||    
T  35270286 gagcagtattcttattcactgatgtgtatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagcccaataacctaata 35270385  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35270386 gtatggcccactaacacatttgctatttggacatccactattaatatttataaca 35270440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 117 - 266
Target Start/End: Complemental strand, 16675711 - 16675563
Alignment:
Q  117 agtattcttattcacatatgtacatc--aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatat 214  Q
    ||||||||||||||| |||||  |||  ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||| |||    
T  16675711 agtattcttattcacttatgtgtatctcaatgttacaaatgagctctatttatagggaaatatagtagcttatgaattaagcccaa---cctagtagtat 16675615  T
Q  215 ggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16675614 ggcccactaacacatttgctatttggacattcactattaatatttataacac 16675563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 25365430 - 25365554
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| |    
T  25365430 caatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgaa 25365529  T
Q  242 catccactattaatatttataacac 266  Q
    |||||||||||||||||||||||||    
T  25365530 catccactattaatatttataacac 25365554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 21178057 - 21178210
Alignment:
Q  117 agtattcttattcacatatgtacatc--aatgttataaatgagctctatttatagggaaataaag--tagcttatgaattaagcccaataacctagtaat 212  Q
    ||||||||||||||| |||||  |||  ||||||| |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||| |    
T  21178057 agtattcttattcacttatgtgtatctcaatgttacaaatgagctctatttataggaaaatatagagtagcttatgaattaagcccaataacctagtagt 21178156  T
Q  213 atggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  21178157 atggcccactaacacatttgccatttgaacatccactattaatatttataacac 21178210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21177943 - 21178017
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  21177943 gaaatagattatactaataccttttcagtaattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 21178017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 23058859 - 23058924
Alignment:
Q  10 tatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  23058859 tatattaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 23058924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 35270205 - 35270258
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  35270205 ttagagcgtgctgataacgtgttatgaaaataagtaaatagacatgataataat 35270258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 39653872 - 39653904
Alignment:
Q  53 ttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||    
T  39653872 ttatgaatacaagtaaatagagatgataataat 39653904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29120884 - 29120939
Alignment:
Q  1 gaaatatattatactaataccttttcagt-gattagagcgtgctgataacgtgtta 55  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||||||||| |||||    
T  29120884 gaaatagattatactaatacatttttagttgattagagcgtgctgataacatgtta 29120939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 30679797 - 30679951
Alignment:
Q  113 gagcagtattcttattcacatatgtac--atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  |||||   |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  30679797 gagcagtattcttattcactaatgtatttatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaataacctagta 30679896  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30679897 gtatggcccactaacacatttgctatttggacatccactattaatatttataaca 30679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 25687563 - 25687718
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || | || |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  25687563 gagcagtattcttattcactgatctatatatcaatgttacaaatgagctctgtttatagggaaatagagtagcttatgaattaagcccaataaactagta 25687662  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25687663 gtatggcccactaacacatttgctatttggacatccactattaatatttataacac 25687718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 30673704 - 30673859
Alignment:
Q  113 gagcagtattcttattcacatatgtac--atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  |||||   |||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  30673704 gagcagtattcttattcactaatgtatttatcaatgttacaaatgaactctatttatagggaaatagagtagcttatgaactaagcccaataacctagta 30673803  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30673804 gtatggcccactaacacatttgctatttggacatccactattaatatttataacac 30673859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 18890150 - 18890001
Alignment:
Q  119 tattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatgg 216  Q
    |||||||||||||  || |||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  18890150 tattcttattcactaatgtgtatatcaatgttacaaatgagttctatttatagggaaatagagtagcttatgaattaagcccaataacctaatagtatgg 18890051  T
Q  217 cccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18890050 cccactaacacatttgctatttggacatccactattaatatttataacac 18890001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 110 - 265
Target Start/End: Original strand, 1913733 - 1913892
Alignment:
Q  110 tatgagcagtattcttattcacatatgt----acatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacc 205  Q
    ||||||||||||||||||||||  ||||    |  ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  1913733 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagcccaataacc 1913832  T
Q  206 tagtaatatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1913833 taatagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 1913892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 113 - 263
Target Start/End: Original strand, 25697331 - 25697483
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || | || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  25697331 gagcagtattcttattcactgatctatatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagtccaataaactagta 25697430  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataa 263  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25697431 gtatggcccactaacacatttgctatttggatatccactattaatatttataa 25697483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 23188114 - 23187961
Alignment:
Q  116 cagtattcttattcacatat--gtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaata 213  Q
    |||||||||||||||| |||  ||  |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||| ||    
T  23188114 cagtattcttattcacttatctgtctatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagctcaataaactagtagta 23188015  T
Q  214 tggcccactaacacatttgctatttggacatccactattaatatttataacaca 267  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23188014 tggtccactaacacatttgctatttggacatccactattaatatttataacaca 23187961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 910852 - 911006
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||  |||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||    
T  910852 gagcagtattcttattcactgatctgtgtatcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaa-aacctagta 910950  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  910951 gtatggcccactaacacatttgctatttggacatccaatattaatatttataacac 911006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 1874001 - 1874152
Alignment:
Q  117 agtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatat 214  Q
    |||||||||||||||  || ||||  ||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || || |||    
T  1874001 agtattcttattcactgatgtgtatctcaatgttacaaatgagctatatttatagggaaatagagtagcctatgaattaagcccaataacataatagtat 1874100  T
Q  215 ggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1874101 ggcccactaacacatttgctatttggacatccactattaatatttataacac 1874152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 12435360 - 12435506
Alignment:
Q  119 tattcttattcacatatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcc 218  Q
    |||||||||||||   |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||    
T  12435360 tattcttattcactagtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcc 12435458  T
Q  219 cactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12435459 cactaacacatttgctatttggacatccaatattaatatttataacac 12435506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 42404788 - 42404643
Alignment:
Q  119 tattcttattcacatatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcc 218  Q
    |||||||||||||   |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||    
T  42404788 tattcttattcactagtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcc 42404690  T
Q  219 cactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  42404689 cactaacacatttgctatttggacatccaatattaatatttataaca 42404643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 42411231 - 42411106
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  42411231 atcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggcccactaacacatttgctatttg 42411133  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||||| ||||||||||||||||||    
T  42411132 gacatccaatattaatatttataacac 42411106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 12439205 - 12439449
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnnnnnnnnnnntatgagcagta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                        |||||||||||    
T  12439205 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatagagagaaggagaagaagagagaatatgagcagta 12439304  T
Q  121 ttcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcc 218  Q
    |||||||||||  || | |   ||| ||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || |||||||    
T  12439305 ttcttattcaccgatctctcactcactgttacaaatgagttctatttatagggaaatagagtagcttatgaactaagcccaataacctattagtatggcc 12439404  T
Q  219 cactaacacatttgctatttggacatccactattaatatttataa 263  Q
    ||  |||  ||||||||||||||||||||||||||||||||||||    
T  12439405 cataaacctatttgctatttggacatccactattaatatttataa 12439449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 16325753 - 16325878
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  16325753 tcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 16325852  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  16325853 acatccactattaatatttataacac 16325878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 16334797 - 16334921
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  16334797 tcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 16334896  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  16334897 acatccactattaatatttataaca 16334921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 110 - 266
Target Start/End: Original strand, 12659191 - 12659351
Alignment:
Q  110 tatgagcagtattcttattcacatatgt----acatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacc 205  Q
    ||||||||||||||||||||||  ||||    |  ||| ||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||    
T  12659191 tatgagcagtattcttattcactaatgtgtgtatctcagtgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacc 12659290  T
Q  206 tagtaatatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12659291 tagtagtatggcccaataacacatttgctatttggacatccactattaatatttataacac 12659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 23200651 - 23200525
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| ||||||| ||||||||||||||| || |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  23200651 atcaatgttacaaatgagttctatttatagggaagtagagtaacttatgaactaagcccaataaactagtagtatggcccactaacacatttgctatttg 23200552  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||||||||||||||||||||||||    
T  23200551 gacatccactattaatatttataacac 23200525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 29333782 - 29333636
Alignment:
Q  119 tattcttattcacatatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcc 218  Q
    |||||||||||||   |||  |||||||||| ||||||||| |||||||||||||||| ||||| ||||||| ||||||||| ||||||||| |||||||    
T  29333782 tattcttattcactagtgtgtatcaatgttacaaatgagctttatttatagggaaatagagtaggttatgaactaagcccaa-aacctagtagtatggcc 29333684  T
Q  219 cactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29333683 cactaacacatttgctatttggacatccaatattaatatttataacac 29333636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 917323 - 917447
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||| ||| ||||||||||| |||||||||||     
T  917323 atcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccga-aacctagtagtatagcccactaacatatttgctattta 917421  T
Q  240 gacatccactattaatatttataaca 265  Q
    |||||||| |||||||||||||||||    
T  917422 gacatccaatattaatatttataaca 917447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 12428922 - 12429043
Alignment:
Q  145 tgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacat 244  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||  |||  ||||||| |||||||||    
T  12428922 tgttacaaatgagttctatttatagggaaatagagtagcttatgaactaagcccaataacctattagtatggcccataaacctatttgctctttggacat 12429021  T
Q  245 ccactattaatatttataacac 266  Q
    ||||||||||||||||||||||    
T  12429022 ccactattaatatttataacac 12429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 4393790 - 4393913
Alignment:
Q  143 aatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggac 242  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||| |||| | |  |||| |||||| ||||| |||    
T  4393790 aatgttacaaatgagctttatttatagggaaataaagtagcttatgaattaaacctaataatctagtagtatgactcgttaacccatttgttatttagac 4393889  T
Q  243 atccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||    
T  4393890 atccactattaatatttataacac 4393913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 55325606 - 55325479
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataaccta---gtaatatggcccactaacacatttgctatt 237  Q
    ||||||| | ||||||||| |||||||||||||||||||||| ||||||| ||||  ||||||||||   ||| |||| |||||||||||||||||||||    
T  55325606 tcaatgtaacaaatgagctttatttatagggaaataaagtagtttatgaactaagttcaataacctaatagtattatgacccactaacacatttgctatt 55325507  T
Q  238 tggacatccactattaatatttataaca 265  Q
    |||||||| | |||||||||||||||||    
T  55325506 tggacatctattattaatatttataaca 55325479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42404895 - 42404821
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42404895 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 42404821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 152 - 265
Target Start/End: Original strand, 48305386 - 48305499
Alignment:
Q  152 aatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacatccactat 251  Q
    ||||| ||||||||||||||||||| |||||| ||| || ||||| |||||| |||||  ||||||||| |||| | ||||||||||||||||||||| |    
T  48305386 aatgaactctatttatagggaaatagagtagcatataaactaagctcaataatctagtggtatggcccattaacgcgtttgctatttggacatccacttt 48305485  T
Q  252 taatatttataaca 265  Q
    ||||||||||||||    
T  48305486 taatatttataaca 48305499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 12665747 - 12665859
Alignment:
Q  151 aaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg---acatcca 247  Q
    |||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||  |||||||   |||||||    
T  12665747 aaatgagctctatttataagaaaatagagtagcttatgaactaag-ccaataacctagtagtatggcccaataacacatttattatttggacaacatcca 12665845  T
Q  248 ctattaatatttat 261  Q
    ||||||||||||||    
T  12665846 ctattaatatttat 12665859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 917194 - 917268
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||    
T  917194 gaaatatattatattaatacctttttagtgattagagcgtgctggtaacgtgttatgaatataagtaaatagaga 917268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 42119802 - 42119895
Alignment:
Q  172 aaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    ||||||||||| ||||| ||||||| |||||| |||||| |||| |||| |||  |||||||||||||||||||||||||||||||||||||||    
T  42119802 aaataaagtagtttatggattaagctcaataatctagtagtatgacccattaatccatttgctatttggacatccactattaatatttataaca 42119895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12435253 - 12435327
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  12435253 gaaatatattatattaatacctttttagtgattagagcgtgctgatatcttgttatgaatataagtaaatagaga 12435327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30679688 - 30679758
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaata 71  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  30679688 gaaatagattgtactaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaata 30679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 33360217 - 33360341
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    |||||||||  ||||||||||||||||| | ||||| |||||||||| || ||| | ||||||| || || ||| | | ||||||||||||||||||||     
T  33360217 tcaatgttacgaatgagctctatttataagaaaatagagtagcttataaactaaactcaataacttaatagtatagtcaactaacacatttgctatttgt 33360316  T
Q  241 acatccactattaatatttataaca 265  Q
    |||| |||| |||||||||||||||    
T  33360317 acattcactcttaatatttataaca 33360341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 25697251 - 25697303
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25697251 ttagagcgtgctgataacgtgttatgaatacaag-aaatagagatgataataat 25697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 48305270 - 48305324
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  48305270 cttttcattgattagagcgtgctgataacatgttatgaatataagtaaatagaga 48305324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 1913656 - 1913708
Alignment:
Q  33 tagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  1913656 tagagcgtgctgataacgtgttatgaaaataagtaaatagacatgataataat 1913708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 23188185 - 23188145
Alignment:
Q  45 ataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  23188185 ataacgtgttatgaatacaagtaaattgagatgataataat 23188145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 12428826 - 12428860
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  12428826 tgttatgaatacaagtaaatagagatgataataat 12428860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 25687501 - 25687535
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  25687501 tgttatgaatacaagtaaatagagatgataataat 25687535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 33360114 - 33360158
Alignment:
Q  40 tgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  33360114 tgctgataac-tgttatgaatacaaataaatagagatgataataat 33360158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 12665641 - 12665677
Alignment:
Q  39 gtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||| | |||||||||||||    
T  12665641 gtgctgataacgtgttatgaaaataagtaaatagaga 12665677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 2982190 - 2982338
Alignment:
Q  119 tattcttattcacatatgt--acatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatgg 216  Q
    ||||||||||||| |||||  | |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |    
T  2982190 tattcttattcacttatgtgtatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaataacctagtagtatag 2982289  T
Q  217 cccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2982290 cccactaacacatttgctatttggacatccactattaatatttataaca 2982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 2978246 - 2978395
Alignment:
Q  119 tattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatgg 216  Q
    |||||||||||||  || |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||    
T  2978246 tattcttattcactgatgtgtatatcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaataacctagtagtatgg 2978345  T
Q  217 cccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2978346 cccactaacacatttgttatttggacatccactattaatatttataacac 2978395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 141 - 268
Target Start/End: Original strand, 15758327 - 15758454
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  15758327 tcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 15758426  T
Q  241 acatccactattaatatttataacacac 268  Q
    ||||||||||||||||||||||||||||    
T  15758427 acatccactattaatatttataacacac 15758454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 110 - 265
Target Start/End: Original strand, 49491221 - 49491380
Alignment:
Q  110 tatgagcagtattcttattcacatatgt----acatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacc 205  Q
    ||||||||||||||||||||||  ||||    |  ||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||    
T  49491221 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatagagaaatagagtagcctatgaattaagctcaataacc 49491320  T
Q  206 tagtaatatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49491321 taatagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 49491380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 49486759 - 49486884
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||| || |||||||||||||||||||||||||||||    
T  49486759 tcaatgttacaaatgagctctatttatagagaaatagagtagcctatgaattaagctcaataacctaatagtatggcccactaacacatttgctatttgg 49486858  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  49486859 acatccactattaatatttataacac 49486884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 15752534 - 15752658
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  15752534 tcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 15752633  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  15752634 acatccactattaatatttataaca 15752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 21453283 - 21453159
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  21453283 caatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgga 21453184  T
Q  242 catccactattaatatttataacac 266  Q
    |||||||||||||||||||||||||    
T  21453183 catccactattaatatttataacac 21453159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 21458457 - 21458333
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  21458457 caatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgga 21458358  T
Q  242 catccactattaatatttataacac 266  Q
    |||||||||||||||||||||||||    
T  21458357 catccactattaatatttataacac 21458333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 21877287 - 21877164
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||| ||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  21877287 caatgttacaaatgagctccatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgga 21877188  T
Q  242 catccactattaatatttataaca 265  Q
    ||||||||||||||||||||||||    
T  21877187 catccactattaatatttataaca 21877164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 21883547 - 21883423
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  21883547 caatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggctcaataacacatttgctatttgga 21883448  T
Q  242 catccactattaatatttataacac 266  Q
    ||||| |||||||||||||||||||    
T  21883447 catccgctattaatatttataacac 21883423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 21477615 - 21477491
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||| |||||||||   ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  21477615 tcaatgttacaaatgagccctatttataaaaaaataaagtagcttatgaactaagcccaataacctagtagtatggcccaataacaca-ttgctatttgg 21477517  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  21477516 acatccactattaatatttataacac 21477491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 21473228 - 21473104
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||| ||||||| ||| || ||||||||| |||||||||||||||||||    
T  21473228 tcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagtccaataagctaatagtatggcccaataacacatttgctatttgg 21473129  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  21473128 acatccactattaatatttataaca 21473104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15758186 - 15758260
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  15758186 gaaatatattatacgaataccttttcagtgattagagcttgctgataacgtgttatgaaaataagtaaatagaga 15758260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 21473367 - 21473295
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  21473367 aatatattatatgaataccttttcagtgattagagcgtgttgataacgtgttatgaaaataagtaaatagaga 21473295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 21453394 - 21453341
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21453394 ttagggcgtgctaataacgtgttatgaatacaagtaaatagagatgataataat 21453341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 49491161 - 49491204
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49491161 ttagagcgtgctgataacgtgttatgaatacaagtaaatagaga 49491204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 2982095 - 2982149
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||||||||    
T  2982095 cttttcggtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 2982149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 21877403 - 21877359
Alignment:
Q  31 attagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  21877403 attagagcgtgctgataacgtgttatgaaaataagtaaatagaga 21877359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 21458549 - 21458515
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  21458549 tgttatgaatacaagtaaatagagatgataataat 21458515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 49486670 - 49486702
Alignment:
Q  53 ttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||    
T  49486670 ttatgaatacaagtaaatagagatgataataat 49486702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 117 - 266
Target Start/End: Complemental strand, 8248260 - 8248109
Alignment:
Q  117 agtattcttattcacata--tgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatat 214  Q
    ||||||||||||||| ||  ||||  ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||    
T  8248260 agtattcttattcacttagatgtaactcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaattaagcctaataatctagtaatat 8248161  T
Q  215 ggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8248160 ggcccactaacacatttgctatttggacatccactattaatatttataacac 8248109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 117 - 265
Target Start/End: Complemental strand, 8242691 - 8242541
Alignment:
Q  117 agtattcttattcacata--tgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatat 214  Q
    ||||||||||||||| ||  ||||  ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  8242691 agtattcttattcacttagatgtaactcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcctaataatctagtaatat 8242592  T
Q  215 ggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8242591 gacccactaacacatttgctatttggacatccactattaatatttataaca 8242541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 114 - 265
Target Start/End: Complemental strand, 29176697 - 29176544
Alignment:
Q  114 agcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaa 211  Q
    ||||||||||||||||||  || |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||     
T  29176697 agcagtattcttattcactaatgtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaataacctagtag 29176598  T
Q  212 tatggcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29176597 tatgacccactaacacatttgctatttggacatccaatattaatatttataaca 29176544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 114 - 256
Target Start/End: Complemental strand, 29185676 - 29185532
Alignment:
Q  114 agcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaa 211  Q
    ||||||||||||||||||  || |||  |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||     
T  29185676 agcagtattcttattcactaatgtgtgtatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaataacctagtag 29185577  T
Q  212 tatggcccactaacacatttgctatttggacatccactattaata 256  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  29185576 tatggcccactaacacattttctatttggacatccaatattaata 29185532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 22822661 - 22822536
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  22822661 atcaatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaa-aacctagtagtatggcccactaacacatttgctatttg 22822563  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||||| ||||||||||||||||||    
T  22822562 gacatccaatattaatatttataacac 22822536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 22826964 - 22826840
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  22826964 atcaatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaa-aacctagtagtatggcccactaacacatttgctatttg 22826866  T
Q  240 gacatccactattaatatttataaca 265  Q
    |||||||| |||||||||||||||||    
T  22826865 gacatccaatattaatatttataaca 22826840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 340329 - 340453
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| |||||| || ||||||||||| ||||||||    
T  340329 caatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggctcaataacacatttgttatttgga 340428  T
Q  242 catccactattaatatttataacac 266  Q
    ||||| |||||||||||||||||||    
T  340429 catccgctattaatatttataacac 340453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 346563 - 346686
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||| ||||||||||||| |||||| || ||||||||||||||||||||    
T  346563 caatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagctcaataacctagtagtatggctcaataacacatttgctatttgga 346662  T
Q  242 catccactattaatatttataaca 265  Q
    ||||| ||||||||||||||||||    
T  346663 catccgctattaatatttataaca 346686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 25830424 - 25830548
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    |||||| || ||| |||||||||||||||||||||| | ||||||||| | ||||||||| || ||||||  || ||||| ||||  |||||||||||||    
T  25830424 tcaatgctacaaaggagctctatttatagggaaatataatagcttatggactaagcccaacaatctagtag-atagcccattaaccaatttgctatttgg 25830522  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  25830523 acatccactattaatatttataacac 25830548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 22822782 - 22822717
Alignment:
Q  10 tatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22822782 tatattaataccttttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 22822717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 8242803 - 8242731
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  8242803 aatatattatatgaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 8242731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29176807 - 29176735
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaataga 73  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  29176807 gaaatatattatattaataccttttcggtgattagagcgtgctgataacgtgttatgaaaataagtaaataga 29176735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 2068782 - 2068882
Alignment:
Q  165 tatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacatccactattaatatttataac 264  Q
    |||||||||||| | ||||||||| | |||||||||| | ||| || ||| ||| | |||| ||||||||||||||||||||||||||||||||||||||    
T  2068782 tatagggaaatataatagcttatggactaagcccaatcatctattagtatagcctattaactcatttgctatttggacatccactattaatatttataac 2068881  T
Q  265 a 265  Q
    |    
T  2068882 a 2068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 22827074 - 22827020
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22827074 cttttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 22827020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 346455 - 346501
Alignment:
Q  29 tgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  346455 tgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 346501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 31904731 - 31904627
Alignment:
Q  158 ctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacatccactattaatat 257  Q
    |||||||||||| |||||  |  | |||| ||| |||| ||||||  |||||| ||| || ||||||| |||||| ||| ||||||||||||  ||||||    
T  31904731 ctctatttatagagaaatgcaacaacttaagaaataagtccaatagtctagtagtatcgcacactaactcatttgttatatggacatccacttataatat 31904632  T
Q  258 ttata 262  Q
    |||||    
T  31904631 ttata 31904627  T

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Target: scaffold0102 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 113 - 266
Target Start/End: Complemental strand, 14179 - 14024
Alignment:
Q  113 gagcagtattcttattcac--atatgtacatcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagta 210  Q
    |||||||||||||||||||  || |||   ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  14179 gagcagtattcttattcactgatgtgtctctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagctcaataacctagta 14080  T
Q  211 atatggcccactaacacatttgctatttggacatccactattaatatttataacac 266  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14079 gtatggctcactaacacatttgctatttggacatccactattaatatttataacac 14024  T

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Target: scaffold0102; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 14241 - 14207
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  14241 tgttatgaatacaagtaaatagagatgataataat 14207  T

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Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 18738697 - 18738573
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18738697 tcaatgttacaaatgagctctatttataggtaaatagagtagcttatgaactaagcccaataacctagtagtatggcccactaacacatttgctatttgg 18738598  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  18738597 acatccactattaatatttataaca 18738573  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 23427606 - 23427481
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  23427606 atcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaa-aacctagtagtatggtccactaacacatttgctatttg 23427508  T
Q  240 gacatccactattaatatttataacac 266  Q
    |||||| | ||||||||||||||||||    
T  23427507 gacatcaaatattaatatttataacac 23427481  T

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Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 33660928 - 33661052
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||| ||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||  |||  |||||||||||||    
T  33660928 tcaatgttacaaatgaactctatttataagaaaatagagtagcttatgaactaagcccaataacctagtaatatggcccataaacctatttgctatttgg 33661027  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  33661028 acatccactattaatatttataaca 33661052  T

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Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 23421760 - 23421636
Alignment:
Q  140 atcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttg 239  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||| ||| | ||||||||||||||||||||||    
T  23421760 atcaatgttacaaatgagctctatttatagggaaatagagtaacttatgaactaagcccaa-aacctagtagtatagtccactaacacatttgctatttg 23421662  T
Q  240 gacatccactattaatatttataaca 265  Q
    |||||| | |||||||||||||||||    
T  23421661 gacatcaaatattaatatttataaca 23421636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23421888 - 23421816
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaataga 73  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23421888 gaaatatattatattaatacttttttagtgattagagcgtgctgataacgtgttatgaatataagtaaataga 23421816  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 18738789 - 18738755
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  18738789 tgttatgaatacaagtaaatagagatgataataat 18738755  T

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Target: scaffold0014 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 111999 - 111874
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  111999 tcaatgttacaaatgaactctatttatagggaaatagagtagcctatgaattaagcccaataacctaatagtatggcccactaacacatttgctatttgg 111900  T
Q  241 acatccactattaatatttataacac 266  Q
    ||||||||||||||||||||||||||    
T  111899 acatccactattaatatttataacac 111874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 106111 - 106062
Alignment:
Q  216 gcccactaacacatttgctatttggacatccactattaatatttataaca 265  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||    
T  106111 gcccactaacacatttgctatttggacatccgctgttaatatttataaca 106062  T

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Target: scaffold0014; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 106228 - 106176
Alignment:
Q  33 tagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| | || |||||||| |||||||||||    
T  106228 tagagcgtgctgataacgtgttatgaaaataaataaatagacatgataataat 106176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 58063 - 57939
Alignment:
Q  141 tcaatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgg 240  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  58063 tcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagtatggcccaataacacatttgctatttgg 57964  T
Q  241 acatccactattaatatttataaca 265  Q
    |||||||||||||||||||||||||    
T  57963 acatccactattaatatttataaca 57939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 9446 - 9323
Alignment:
Q  142 caatgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttgga 241  Q
    |||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  9446 caatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccaataatacatttgctatttgga 9347  T
Q  242 catccactattaatatttataaca 265  Q
    ||||||||||||||||||||||||    
T  9346 catccactattaatatttataaca 9323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 9555 - 9509
Alignment:
Q  29 tgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  9555 tgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 9509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 6317 - 6435
Alignment:
Q  145 tgttataaatgagctctatttatagggaaataaagtagcttatgaattaagcccaataacctagtaatatggcccactaacacatttgctatttggacat 244  Q
    ||||| || |||| |||||||| ||||||||| ||||||||||||| |||||||||||||||| |  ||| |||||  ||   |||||||||||||||||    
T  6317 tgttacaattgagttctatttacagggaaatagagtagcttatgaactaagcccaataacctattcgtatagcccataaatttatttgctatttggacat 6416  T
Q  245 ccactattaatatttataa 263  Q
    ||||| |||||||||||||    
T  6417 ccactgttaatatttataa 6435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 6206 - 6255
Alignment:
Q  36 agcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6206 agcgtgctgataacatgttatgaatacaagtaaatagagatgataataat 6255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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