View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_181 (Length: 246)
Name: NF3918_low_181
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_181 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 25362942 - 25363167
Alignment:
| Q |
9 |
attgattatacataaaaataaaaccaatttttagaagagaatcattcacacactaatttgttccgaaaacaccaaatttctctatttcacaccgtaatct |
108 |
Q |
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| T |
25362942 |
attgatcatacataaaaataaaaccaatttttagaaaagaatcattcacacactaatttgttccgaaaacaccaaatttctttatttcacaccgtaatct |
25363041 |
T |
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| Q |
109 |
ctgaagttggtagacatgcatgaagaaaggaatcaaatggagctcacactaggagggtttttgatgagaatgagattgttcctttttccttgctgctttc |
208 |
Q |
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| T |
25363042 |
ctgaagttggtagacatgcatgaagaaaggaatcaaatggaactcacactaggaggg--tttgatgagaatgagattgttcctttttccttgctgctttc |
25363139 |
T |
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| Q |
209 |
tctacaatttttcatttcctcgcctatg |
236 |
Q |
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| T |
25363140 |
actacaatttttcatttcctcgcctatg |
25363167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 25360787 - 25360878
Alignment:
| Q |
53 |
ttcacacactaatttgttccgaaaacaccaaatttctctatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
146 |
Q |
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| T |
25360787 |
ttcacacccttaattgatcccaaaaccccaaatttctctatttcataccctaatcta--aaattgatagacatgcatgaagaaaggaatcaaat |
25360878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 25359848 - 25359914
Alignment:
| Q |
80 |
ccaaatttctctatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
146 |
Q |
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| T |
25359848 |
ccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaattaaat |
25359914 |
T |
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