View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_183 (Length: 245)
Name: NF3918_low_183
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_183 |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 35042294 - 35042522
Alignment:
| Q |
10 |
ggtcccaattttaacttggatgccaccaatttcatatttatgtgattggagcctaagaaatatagaggatcttgatctatctttgttcaaattataaaag |
109 |
Q |
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| T |
35042294 |
ggtcccaattttaacttgggtgccaccaatttcatatttatgtgattggagcctaagaaatatagaggatcttgatctatcattcttcaaat---aaaag |
35042390 |
T |
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| Q |
110 |
tgtatattaattaaatagagagaattttgaccctgttagctaggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaac |
209 |
Q |
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| T |
35042391 |
tgtatattaa----atggagagaattttgaccctgttagctaggacaggtgccatgccttgccaccattcatattgaatttcttgagtctcccaaagaac |
35042486 |
T |
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| Q |
210 |
attaccaagataagaataagcttcccttctgtactc |
245 |
Q |
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| T |
35042487 |
attaccaagataagaataagcttcccttctgtactc |
35042522 |
T |
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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 34988863 - 34988952
Alignment:
| Q |
148 |
gctaggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataagaataagcttccctt |
237 |
Q |
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| T |
34988863 |
gctaggacaagttccatgctttgccaccattcatattgaatttcttgagcatcccaaagaacattaccaaaataaggataaacttccctt |
34988952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 15560236 - 15560141
Alignment:
| Q |
150 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataagaataagcttcccttctgtactc |
245 |
Q |
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| T |
15560236 |
taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctaccaaagaacataaccaatataaggatacacttcccctctgtactc |
15560141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 15559699 - 15559794
Alignment:
| Q |
150 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataagaataagcttcccttctgtactc |
245 |
Q |
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| T |
15559699 |
taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctcccaaagaacataaccaatataaggatacacttcccctctgtactc |
15559794 |
T |
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