View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_184 (Length: 245)
Name: NF3918_low_184
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_184 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 3200630 - 3200386
Alignment:
| Q |
1 |
cagttatggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtgaaattgcatttactattattcattaaggaatcaatatatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3200630 |
cagttatggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtgaaattgcatttactattattcattaaggaatcaatatatat |
3200531 |
T |
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| Q |
101 |
acacaaggagttcctctcttgcttgcacaccaagtaacttgcaataggtgtaataaacaattatttacttaagagacaagtaactaaccctaaacaaact |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3200530 |
acacaaggagttcctctattgcttgcacaccaagtaacttgcaataggtgtaataaacaattatttacttaagagacaagtaactaaccctaaacaaact |
3200431 |
T |
|
| Q |
201 |
atatttttaggtatgacaaattggatccggctccctgtagttgga |
245 |
Q |
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| T |
3200430 |
atatttttaggtatgacaaattggatccggctccctgtagttgga |
3200386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 33686111 - 33685958
Alignment:
| Q |
4 |
ttatggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtgaaattgcatttactattattcattaaggaatcaatatatataca |
103 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
33686111 |
ttatggaatgagaaagagaggatgagggattaagagattaagagaaagtgaatgtg-aattgcattagctattattcattgaggaatcaatatatacaca |
33686013 |
T |
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| Q |
104 |
caaggagttcctctcttgcttgcacaccaagtaacttgcaataggtgtaataaac |
158 |
Q |
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| T |
33686012 |
caagatattccactaatgcttgcacgccaagtaacttgcaataggtgtaacaaac |
33685958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 33703165 - 33703012
Alignment:
| Q |
4 |
ttatggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtgaaattgcatttactattattcattaaggaatcaatatatataca |
103 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
33703165 |
ttatggaatgagaaagagaggatgagggattaagagattaagagaaagtgaatgtg-aattgcattagctattattcattgaggaatcaatatatacaca |
33703067 |
T |
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| Q |
104 |
caaggagttcctctcttgcttgcacaccaagtaacttgcaataggtgtaataaac |
158 |
Q |
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| T |
33703066 |
caagatattccactaatgcttgcacgccaagtaacttgcaataggtgtaacaaac |
33703012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 33682048 - 33681946
Alignment:
| Q |
1 |
cagttatggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtgaaattgcatttactattattcattaaggaatcaatatatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||| |||||||||||||||| |
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| T |
33682048 |
cagttatggaatgagaaagagagaatgagggattaagagattaagggaaaatgaatgtg-aattgca-ttagcattattcattgaggaatcaatatatat |
33681951 |
T |
|
| Q |
101 |
acaca |
105 |
Q |
| |
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||||| |
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| T |
33681950 |
acaca |
33681946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 33699105 - 33699003
Alignment:
| Q |
1 |
cagttatggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtgaaattgcatttactattattcattaaggaatcaatatatat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||| |||||||||||||||| |
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| T |
33699105 |
cagttatggaatgagaaagagagaatgagggattaagagattaagggaaaatgaatgtg-aattgca-ttagcattattcattgaggaatcaatatatat |
33699008 |
T |
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| Q |
101 |
acaca |
105 |
Q |
| |
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||||| |
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| T |
33699007 |
acaca |
33699003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 34441510 - 34441547
Alignment:
| Q |
9 |
gaatgagaaagagagaatgagggattaagagattaaga |
46 |
Q |
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|||| ||||||| ||||||||||||||||||||||||| |
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| T |
34441510 |
gaataagaaagacagaatgagggattaagagattaaga |
34441547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 24811704 - 24811853
Alignment:
| Q |
4 |
ttatggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtg-aaattgcatttactattattcattaaggaatcaatatatatac |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||| |||||||||||| ||||||||||||||||| |
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| T |
24811704 |
ttatggaatgagaaagagagaatgagggattaagagatttagagaaagtgaacgtgaaaattgcattagctattattcattgaggaatcaatatatatat |
24811803 |
T |
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| Q |
103 |
acaaggagttcctctcttgcttgcacaccaagtaacttgcaataggtgtaa |
153 |
Q |
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|| || |||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
24811804 |
acgagatgttcctctaatacttgcacaccaagtaacttgcaa-aggtgtaa |
24811853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 39736542 - 39736445
Alignment:
| Q |
8 |
ggaatgagaaagagagaatgagggattaagagattaagagaaaatgaatgtgaaattgcatttactattattcattaaggaatcaatatatatacacaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||| |||||||| ||||| ||||||| |
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| T |
39736542 |
ggaatgagaaagagagaatgagggattaagagattaagagaaagtgaatgtgaa--tgcactagctattattcattgaggaatcagaatatacacacaag |
39736445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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