View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_185 (Length: 244)
Name: NF3918_low_185
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_185 |
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Alignment Details
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 19785129 - 19785060
Alignment:
| Q |
163 |
tgcgtgggatccaagttgtttaactacgcaaatcggggtactggttaagttaaaatattgttccttgtttggc |
235 |
Q |
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| T |
19785129 |
tgcgtgggatccaagttgtttaactacgcaaatc---ttactcgttaagttaaaatattgttccttgtttggc |
19785060 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19796829 - 19796879
Alignment:
| Q |
1 |
tttgacttgagagtatagatctcaggtgggccaacgagagtgacggcggcc |
51 |
Q |
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| T |
19796829 |
tttgatttgagtgaatagatctcaggtgggccaacgagagcgacggcggcc |
19796879 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15836052 - 15836100
Alignment:
| Q |
1 |
tttgacttgagagtatagatctcaggtgggccaacgagagtgacggcgg |
49 |
Q |
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| T |
15836052 |
tttgatttgagagtatagatctcaggtgggccaaggagagtgacggcgg |
15836100 |
T |
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