View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_188 (Length: 241)
Name: NF3918_low_188
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_188 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 5763739 - 5763516
Alignment:
| Q |
4 |
agagaggggaatgttgtgtcttacgtaggaatgatactattccagatccagcagccaggtaaatgaacaataatgaaacctgaaattgcaagtgcattag |
103 |
Q |
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| T |
5763739 |
agagaggggaatgttgtgtcttacgtaggaatgatactattccagatccagcagccaggtaaatgaacaataatgaaacctgaaatttcaagtgcattag |
5763640 |
T |
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| Q |
104 |
ttcatgcaatcaaaatttgtaccaactatgaatgaactagtaagaaaacattataaaaatatatcaatctctataatacaaatagctagctaaaggggaa |
203 |
Q |
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| T |
5763639 |
ttcatgcaatcaaaatttgtaccaactatgaatgaactagtaagaaaacattataaaaatatatcaatctctataatacaaatagctagctaaaggggaa |
5763540 |
T |
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| Q |
204 |
caataaagcaccttagaaacttct |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
5763539 |
caataaagcaccttagaaacttct |
5763516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 5820822 - 5820755
Alignment:
| Q |
22 |
tcttacgtaggaatgatactattccagatccagcagccaggtaaatgaacaataatgaaacctgaaat |
89 |
Q |
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|||||||||| |||||| |||||||||||||| || | |||||||| || ||||| | |||||||||| |
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| T |
5820822 |
tcttacgtagaaatgatgctattccagatccaacaccaaggtaaataaataataacgcaacctgaaat |
5820755 |
T |
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