View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_189 (Length: 240)
Name: NF3918_low_189
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_189 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 52473258 - 52473057
Alignment:
| Q |
17 |
aataatccttattatgtttctgggacaaacttttttccaacggtgtagatttccatacaacaggttgttccaaaaaaggggtttctgccaagattagacc |
116 |
Q |
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| T |
52473258 |
aataatccttattatgtttctgggacaaacttttttccaacggtgtagatttccatacaacaggttgttccaaaaaaggggtttctgccaagattagacc |
52473159 |
T |
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| Q |
117 |
tgggttttctgtcaagactaaaccttgtatggagtcagtcaaatagagtatcctcaagaacaaaccgggggaaaaatgggataactactaggaaagtaaa |
216 |
Q |
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| T |
52473158 |
tgggttttctgtcaagactaaaccttgtatggagtcattcaaatagagtatcctcaagaacaaaccggaggaaaaatgggataactactaggaaagtaaa |
52473059 |
T |
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| Q |
217 |
ga |
218 |
Q |
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|| |
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| T |
52473058 |
ga |
52473057 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 1004793 - 1004721
Alignment:
| Q |
165 |
tatcctcaagaacaaaccgggggaaaaatgggataactactaggaaagtaaagatcaaaaaagaaaagaccgt |
237 |
Q |
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| T |
1004793 |
tatcctcaacgacataccgggggtacaatgggatagttactagggaagtaaaaatcaaaaaagaaaagaccgt |
1004721 |
T |
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Target: scaffold0648 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 6017 - 5984
Alignment:
| Q |
207 |
ggaaagtaaagatcaaaaaagaaaagaccgtcat |
240 |
Q |
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| T |
6017 |
ggaaagtaaacatcaaaaaagaaaagaccgtcat |
5984 |
T |
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Target: scaffold0274 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 17441 - 17474
Alignment:
| Q |
207 |
ggaaagtaaagatcaaaaaagaaaagaccgtcat |
240 |
Q |
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| T |
17441 |
ggaaagtaaacatcaaaaaagaaaagaccgtcat |
17474 |
T |
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