View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_19 (Length: 622)
Name: NF3918_low_19
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 21114341 - 21113800
Alignment:
| Q |
1 |
ttgtctaatttaagcaataagattgagccttgtttggactgcaacaaataaattttatcaaagatatatggtcaatacattttcagaaagcaaaaacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
21114341 |
ttgtctaatttaagcaataagattgagccttgtttggactgcaacaaataaattttatcatagatatatggtcaatacattttcagaaagcaaaaacagc |
21114242 |
T |
|
| Q |
101 |
ataccttatgtaagagctcaagaagtagatgcaccgtcagcagagctaagttcgcaataacagatgcacagaaggatacttgagctttcactttaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21114241 |
ataccttatgtaagagctcaagaagtagatgcactgtcagctgagctaagttcgcaataacagctgcacagaaggatacttgagctttcactttaacctt |
21114142 |
T |
|
| Q |
201 |
tacaccatcacacaactcggttctttttacaccttctatggtttggtcaacggtgttgtttgctcttcccctcacctaatctatcatttcattannnnnn |
300 |
Q |
| |
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||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
21114141 |
tacactatcacacaacacgattctttttacaccttctatggtttggtcaacggtgctgtttgctcttcccctcacctaatctatcattttattatttttt |
21114042 |
T |
|
| Q |
301 |
nnnnnnnnnngaaagattccattattattaatacaagaagctatactattgtctatattatacttgatttatatattgttcatagtactgtcaaatgcat |
400 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
21114041 |
tatgttttttgaaagattccattattattaatacaagaaactatactattgtctatattatccttgatttatatattgttcattgcactgtcaaatgcat |
21113942 |
T |
|
| Q |
401 |
cattaggctccactccatgacagtgtttccgtatgctttgttgtttattcattgttcaaacacaaactttaaatattaacattaaatgactaagcaagcc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21113941 |
cattaggctccactccatgacagtgtttccgtatgctttgttgtttattcattgttcaaacacaaactttaaatatgaacattaaatgactaagcaagcc |
21113842 |
T |
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| Q |
501 |
attatttctttgtcaagcatgccatgtttcttatttactaag |
542 |
Q |
| |
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||| ||| | ||||||||||||||||||||| ||||||||| |
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| T |
21113841 |
attgttttatcgtcaagcatgccatgtttcttgtttactaag |
21113800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 612
Target Start/End: Complemental strand, 33516878 - 33516829
Alignment:
| Q |
564 |
atggatcccctgcagcggcagca-gtgctgctgttgtgattttgtctgtg |
612 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||||||| |||| |
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| T |
33516878 |
atggatcctctgcagcggcaggacgtgctgctgttgtgattttgtgtgtg |
33516829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 612
Target Start/End: Original strand, 12642467 - 12642516
Alignment:
| Q |
564 |
atggatcccctgcagcggcagca-gtgctgctgttgtgattttgtctgtg |
612 |
Q |
| |
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|||||||| |||||||||||| | ||||||||||||||||||||| |||| |
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| T |
12642467 |
atggatcctctgcagcggcaggacgtgctgctgttgtgattttgtgtgtg |
12642516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 612
Target Start/End: Complemental strand, 42709402 - 42709353
Alignment:
| Q |
564 |
atggatcccctgcagcggcagca-gtgctgctgttgtgattttgtctgtg |
612 |
Q |
| |
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|||||||| |||||||||||| | ||||||||||||||||||||| |||| |
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| T |
42709402 |
atggatcctctgcagcggcaggacgtgctgctgttgtgattttgtgtgtg |
42709353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 607
Target Start/End: Original strand, 39948957 - 39949001
Alignment:
| Q |
564 |
atggatcccctgcagcggcagca-gtgctgctgttgtgattttgt |
607 |
Q |
| |
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|||||||| |||||||||||| | ||||||||||||||||||||| |
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| T |
39948957 |
atggatcctctgcagcggcaggacgtgctgctgttgtgattttgt |
39949001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 612
Target Start/End: Complemental strand, 43669830 - 43669778
Alignment:
| Q |
561 |
tcaatggatcccctgcagcggcagca-gtgctgctgttgtgattttgtctgtg |
612 |
Q |
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||||||||||| |||||||||||| | ||||| ||||||||||||||| |||| |
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| T |
43669830 |
tcaatggatcctctgcagcggcaggacgtgctactgttgtgattttgtgtgtg |
43669778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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