View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_191 (Length: 240)
Name: NF3918_low_191
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_191 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 41781915 - 41782108
Alignment:
| Q |
43 |
ctagcctcttaattgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa |
142 |
Q |
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| T |
41781915 |
ctagcctcttaattgttaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa |
41782014 |
T |
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| Q |
143 |
aagtgtgaatgtgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgta |
240 |
Q |
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| T |
41782015 |
aagtgtgaatgtga----catgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatttggtatataaatgta |
41782108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 40519735 - 40519536
Alignment:
| Q |
43 |
ctagcctcttaattgctaaaactaacaatgcaagaggctaatatga---aaataaaaattcgaatacaaagtcatcgcaatgttaat----atgttaatt |
135 |
Q |
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| T |
40519735 |
ctagcctcttaattgttaaaactaacaatgca-gaggataatataacaaaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatt |
40519637 |
T |
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| Q |
136 |
tacataaaagtgtgaatgtgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataa |
235 |
Q |
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| T |
40519636 |
tacataaaagtgtgaatgtgacatg----ttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtgaccatctggtatataa |
40519541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 40510685 - 40510645
Alignment:
| Q |
117 |
caatgttaatatgttaatttacataaaagtgtgaatgtgac |
157 |
Q |
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| T |
40510685 |
caatgttaatgtgttaaattacataaaagtgtgaatgtgac |
40510645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 18163764 - 18163575
Alignment:
| Q |
43 |
ctagcctcttaattgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa |
142 |
Q |
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| T |
18163764 |
ctagcctcttagttgttaaaactaacaatgca-gaggctaatatgaacaaaaaagtcctaaaacaaagtcatcaaaatgttaatatgttaatttacataa |
18163666 |
T |
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| Q |
143 |
aagtgtgaatgtgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaat |
237 |
Q |
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| T |
18163665 |
aagtgtgaatgtga----catgttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatctggtatataaat |
18163575 |
T |
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