View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_194 (Length: 239)
Name: NF3918_low_194
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_194 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 52472990 - 52472762
Alignment:
| Q |
1 |
ataaagaaacagtgagattgagcagaatcccataataacaataattggatacaatccacacggtcacgatacatatcattcagcttgaaaagacggagta |
100 |
Q |
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| T |
52472990 |
ataaagaaacagtgagattgagcagaatcccataataacaataattggatacaatccacacggtcacgatacaggtcattcagcttgaaaagatggagta |
52472891 |
T |
|
| Q |
101 |
aatactaaatatgatatgacatgtaagtattacaagctattttgcaataggaacacaaaaccaactcacccggcaaatccttctccaaaatcttccattc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472890 |
aatgctaaatatgatatgacatgtaagtattacaagctattttgcaataggaacacaaaaccaactcacccggcaaatccttctccaaaatcttccattc |
52472791 |
T |
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| Q |
201 |
tttcttgatttctttagcccaattctctg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
52472790 |
tttcttgatttctttagcccaattctctg |
52472762 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 38793250 - 38793342
Alignment:
| Q |
132 |
acaagctattttgcaataggaacacaaaaccaactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaatt |
224 |
Q |
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| T |
38793250 |
acaagctattttgtaagaggaatacaaaacaatctcacctggctaatccttctccaaaatctttctttctttccggatttctttagcccaatt |
38793342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 7763371 - 7763433
Alignment:
| Q |
164 |
actcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattct |
226 |
Q |
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| T |
7763371 |
actcacccggcaaatgcttctccaaaatcctccactcttcctggatttttttagcccaattct |
7763433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 11719548 - 11719487
Alignment:
| Q |
163 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaatt |
224 |
Q |
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|||| |||||||||| || ||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
11719548 |
aactaacccggcaaactctcctccaaaatcttccactctttctggattactttagcccaatt |
11719487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 33363286 - 33363227
Alignment:
| Q |
163 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaa |
222 |
Q |
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|||||||||||||||| || |||||||||| |||| |||| || ||||| |||||||||| |
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| T |
33363286 |
aactcacccggcaaatgctcctccaaaatcctccactcttcctggatttttttagcccaa |
33363227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 5839673 - 5839735
Alignment:
| Q |
163 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattc |
225 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||||| ||||||| |||| ||||||||||||| |
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| T |
5839673 |
aactcacctggcaaattgttctctaaaatcttccactctttctggattcttttagcccaattc |
5839735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 1004567 - 1004527
Alignment:
| Q |
151 |
gaacacaaaaccaactcacccggcaaatccttctccaaaat |
191 |
Q |
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||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
1004567 |
gaacacaaagcaaacccacccggcaaatccttctccaaaat |
1004527 |
T |
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