View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_195 (Length: 239)
Name: NF3918_low_195
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_195 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 6698550 - 6698329
Alignment:
| Q |
18 |
acttccctgcactttgcttttgcatacctattcttcataaggacttcaactgagccaacatttcaaggctatttccatcgtcgtttcatggctaaacaag |
117 |
Q |
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| T |
6698550 |
acttccctgcactttgcttttgcatacctattcttcataaggacttcaactgagccaacatttcaaggctatttccatcgtcgtttcatgtctaaacaag |
6698451 |
T |
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| Q |
118 |
agcgtcttatgaaggcatacaactttgatgcaaataggtataatgagctttgtaaagcttgttatccaagtaatcatgttggtgttggtgcaaatgcaaa |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6698450 |
agcgtcttatgaagacatacaactttgatgcaaataggtataatgagctttgcaaagcttgttatccaagtaatcatgttggtgttggtgcaaatgcaaa |
6698351 |
T |
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| Q |
218 |
agctgaaacattttctccacct |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
6698350 |
agctgaaacattttctccacct |
6698329 |
T |
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