View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_199 (Length: 238)
Name: NF3918_low_199
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_199 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7004824 - 7004731
Alignment:
| Q |
1 |
tcattatttatatgttttggattatgttggttaattgaaaattgtagcataatgcattgccaaattcttagtagagtgtaatatgttaccttga |
94 |
Q |
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| T |
7004824 |
tcattatttatatgttttggattatgttggttaattgaaaattgtagcataatgaattgccaaattcttagtagagtgtaatatgttaccttga |
7004731 |
T |
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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 7004672 - 7004602
Alignment:
| Q |
152 |
caagaaggcatgttccatttttcttctgagccacatctttgtcaacttgtaaggatttttatctcattcat |
222 |
Q |
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| T |
7004672 |
caagaaggcatgttccatttttcttctgagccacatctttgtcaacttgtaaggatttttatctcattcat |
7004602 |
T |
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