View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_202 (Length: 237)
Name: NF3918_low_202
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_202 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 46885444 - 46885551
Alignment:
| Q |
16 |
atgaatcaggagcatcaacaacaagaagaagcttataataataatcaagaacattcatacttgaatatttttgatggatttccaaatcatgatcaatata |
115 |
Q |
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| T |
46885444 |
atgaatcctgagcatcaacaacaagaagaagcttataataataatcaagaacattcatacttgaatatttttgatggatttccgaatcatgatcaatata |
46885543 |
T |
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| Q |
116 |
tgaagatg |
123 |
Q |
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| T |
46885544 |
tgaagatg |
46885551 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 46885591 - 46885645
Alignment:
| Q |
166 |
gatgcttataataacatgtatccaccaaccatgatgtatggtgaaccatcttcat |
220 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46885591 |
gatgcttataataacatgtatccaccaaccatgacgtatggtgaaccatcttcat |
46885645 |
T |
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