View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_low_203 (Length: 237)

Name: NF3918_low_203
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_low_203
NF3918_low_203
[»] chr3 (7 HSPs)
chr3 (1-222)||(24240619-24240841)
chr3 (83-159)||(40576000-40576077)
chr3 (74-113)||(265600-265639)
chr3 (114-159)||(55378942-55378988)
chr3 (115-159)||(39996390-39996435)
chr3 (95-159)||(51335506-51335571)
chr3 (120-156)||(45779003-45779039)
[»] chr4 (7 HSPs)
chr4 (86-154)||(4064661-4064730)
chr4 (86-159)||(29963337-29963411)
chr4 (95-159)||(2472792-2472856)
chr4 (70-165)||(50683293-50683389)
chr4 (115-159)||(19037625-19037670)
chr4 (120-159)||(30188361-30188401)
chr4 (120-159)||(46387584-46387624)
[»] chr5 (4 HSPs)
chr5 (61-159)||(13162011-13162115)
chr5 (67-153)||(14046550-14046637)
chr5 (74-104)||(35360946-35360976)
chr5 (67-108)||(4309105-4309145)
[»] chr7 (7 HSPs)
chr7 (113-159)||(1694598-1694645)
chr7 (115-159)||(2006964-2007009)
chr7 (115-159)||(12526731-12526776)
chr7 (95-159)||(43542855-43542920)
chr7 (115-159)||(49077691-49077736)
chr7 (70-106)||(3958580-3958616)
chr7 (115-159)||(42913722-42913766)
[»] chr6 (3 HSPs)
chr6 (85-159)||(27978427-27978504)
chr6 (115-159)||(7683684-7683729)
chr6 (120-159)||(5266217-5266257)
[»] chr1 (4 HSPs)
chr1 (70-112)||(48326511-48326553)
chr1 (97-165)||(9479043-9479112)
chr1 (65-118)||(25962141-25962193)
chr1 (88-158)||(3592382-3592456)
[»] chr8 (3 HSPs)
chr8 (115-159)||(4053313-4053358)
chr8 (85-156)||(8878600-8878673)
chr8 (87-159)||(9407158-9407233)
[»] chr2 (3 HSPs)
chr2 (86-154)||(41274232-41274301)
chr2 (116-159)||(6126235-6126279)
chr2 (87-159)||(9536541-9536616)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24240841 - 24240619
Alignment:
Q  1 caaaagttttgcgtccgcactttgaatccctatttttaaatccgattatgtatattctttaaaaaatttaataaatttttacatgaatgtttagaatatt 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  24240841 caaaagttttgcgtccgcactttggatccctgtttttaaatccgattatgtatattctttaaaaattttaataaatttttacatgattgtttagaatatt 24240742  T
Q  101 ataagattctctttaaaacaattataatt-ttttaccaaacataaattaaatatgaatttaatattccaaatatgtgtgtgccactctctcaagtcttat 199  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24240741 ataagattctctttaaaacaattataatttttttaccaaacataaattaaatatgaatttaatattccaaatatgtgtgtgccactctctcaagtctaat 24240642  T
Q  200 ggaatgtatgttaatgttagttg 222  Q
    |||||||||||||||||||||||    
T  24240641 ggaatgtatgttaatgttagttg 24240619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 40576000 - 40576077
Alignment:
Q  83 atgaatgtttagaatattataagattctctttaaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    ||||||||||||||||||||||||  |||||||||| ||||| |||||||  ||||| ||| |||||||||| |||||    
T  40576000 atgaatgtttagaatattataagagactctttaaaaaaattagaatttttagccaaagcatgaattaaatataaattt 40576077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 265639 - 265600
Alignment:
Q  74 aatttttacatgaatgtttagaatattataagattctctt 113  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  265639 aatttttacatggatgtttagaatattataacattctctt 265600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 55378942 - 55378988
Alignment:
Q  114 taaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  55378942 taaaaaaattagaattttttaccaaaacataaattaaatatgaattt 55378988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 39996390 - 39996435
Alignment:
Q  115 aaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||    
T  39996390 aaaacaattagaattttttaacaaaacataaattaaatatgaattt 39996435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 51335506 - 51335571
Alignment:
Q  95 aatattataagattctctttaaaacaattataatttttta-ccaaacataaattaaatatgaattt 159  Q
    |||||||||||| |||||  |||| ||||| || |||||| ||||||||||||| |||||||||||    
T  51335506 aatattataagaatctctccaaaaaaattagaactttttaaccaaacataaatttaatatgaattt 51335571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 45779003 - 45779039
Alignment:
Q  120 aattataattttttaccaaacataaattaaatatgaa 156  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  45779003 aattataattttttaacaaacatgaattaaatatgaa 45779039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 4064661 - 4064730
Alignment:
Q  86 aatgtttagaatattataagattctctttaaaacaattataattttttacca-aacataaattaaatatg 154  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||| |||||||||||    
T  4064661 aatgtttagaatattataagaatctctttaaaaaaattagaattttttaacataacattaattaaatatg 4064730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 29963411 - 29963337
Alignment:
Q  86 aatgtttagaatattataagattctctttaaaacaattataatttttta-ccaaacataaattaaatatgaattt 159  Q
    ||||| ||||| ||| ||| |||| || ||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  29963411 aatgtgtagaacattgtaaaattcactataaaaaaattagaattttttaaccaaacataaattaaatatgaattt 29963337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 2472856 - 2472792
Alignment:
Q  95 aatattataagattctctttaaaacaattataattttttaccaaacataaattaaatatgaattt 159  Q
    |||||||||||| ||||||||| | || || ||||||| || |||||||||||||||||| ||||    
T  2472856 aatattataagaatctctttaagaaaaatagaatttttaacaaaacataaattaaatatggattt 2472792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 50683293 - 50683389
Alignment:
Q  70 aataaatttttacatgaatgtttagaatattataagattctctttaaaacaattataa-ttttttaccaaacataaattaaatatgaatttaatatt 165  Q
    |||||| |||| ||||||  |||| |||||||||||| |||||  |||| || ||||| ||||| || |||||| |||||||||||||||| |||||    
T  50683293 aataaaattttgcatgaaaatttataatattataagaatctctcaaaaaaaaatataactttttaacaaaacatgaattaaatatgaattttatatt 50683389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 19037670 - 19037625
Alignment:
Q  115 aaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  19037670 aaaaaaattataattttttaacaaaacataaattaaatatgaattt 19037625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 30188401 - 30188361
Alignment:
Q  120 aattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  30188401 aattataattttttaacaaaacataaattaaatatgaattt 30188361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 46387624 - 46387584
Alignment:
Q  120 aattataatttttta-ccaaacataaattaaatatgaattt 159  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  46387624 aattagaattttttaaccaaacataaattaaatatgaattt 46387584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 13162115 - 13162011
Alignment:
Q  61 aaaaaatttaataaatttttacatgaatgtttagaatattataagattctctt----taaaacaattataatttttt--accaaacataaattaaatatg 154  Q
    |||||| | ||||| ||||| ||||||| ||||||||||||||||| ||||||     |||| ||||||||||||||  || || ||||||||||||||     
T  13162115 aaaaaaatgaataagtttttgcatgaatatttagaatattataagaatctcttccaaaaaaaaaattataatttttttaacaaagcataaattaaatata 13162016  T
Q  155 aattt 159  Q
    |||||    
T  13162015 aattt 13162011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 14046550 - 14046637
Alignment:
Q  67 tttaataaatttttacatgaatgtttagaatattataagattctct-ttaaaacaattataattttttaccaaacataaattaaatat 153  Q
    |||||| |||||||||||| ||||||| |||||||||||| |||||   |||| ||||||||||||  |  |||| ||||||||||||    
T  14046550 tttaatgaatttttacatgcatgtttaaaatattataagaatctctcacaaaaaaattataattttaaataaaacttaaattaaatat 14046637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 104
Target Start/End: Complemental strand, 35360976 - 35360946
Alignment:
Q  74 aatttttacatgaatgtttagaatattataa 104  Q
    |||||||||||||||||||||||||||||||    
T  35360976 aatttttacatgaatgtttagaatattataa 35360946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 4309105 - 4309145
Alignment:
Q  67 tttaataaatttttacatgaatgtttagaatattataagatt 108  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  4309105 tttaataaatttt-acatgaatgtttataatattataagatt 4309145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 1694645 - 1694598
Alignment:
Q  113 ttaaaacaattataatttttta-ccaaacataaattaaatatgaattt 159  Q
    |||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  1694645 ttaaaaaaattagaattttttaaccaaacataaattaaatatgaattt 1694598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 2006964 - 2007009
Alignment:
Q  115 aaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  2006964 aaaaaaattataattttttaacaaaacataaattaaatatgaattt 2007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 12526776 - 12526731
Alignment:
Q  115 aaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  12526776 aaaaaaattataattttttaacaaaacataaattaaatatgaattt 12526731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 43542855 - 43542920
Alignment:
Q  95 aatattataagattctctttaaaacaattataatttttt-accaaacataaattaaatatgaattt 159  Q
    |||||||||||| |||| |||||| ||||| |||||||| || |||||| |||| |||||||||||    
T  43542855 aatattataagaatctccttaaaaaaattagaattttttaacaaaacattaatttaatatgaattt 43542920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 49077691 - 49077736
Alignment:
Q  115 aaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  49077691 aaaaaaattataattttttaacaaaacataaattaaatatgaattt 49077736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 3958616 - 3958580
Alignment:
Q  70 aataaatttttacatgaatgtttagaatattataaga 106  Q
    ||||||||||||||  |||||||||||||||||||||    
T  3958616 aataaatttttacaaaaatgtttagaatattataaga 3958580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 42913766 - 42913722
Alignment:
Q  115 aaaacaattataattttttaccaaacataaattaaatatgaattt 159  Q
    |||| ||||| ||||||| || |||||||||||||||||||||||    
T  42913766 aaaaaaattagaatttttaacaaaacataaattaaatatgaattt 42913722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 27978427 - 27978504
Alignment:
Q  85 gaatgtttagaatattataagattctctt--taaaacaattataatttttt-accaaacataaattaaatatgaattt 159  Q
    |||||||||||||||||||||| ||||||   | || ||||| |||||||| ||||||||| || |||||||||||||    
T  27978427 gaatgtttagaatattataagaatctcttccaagaaaaattagaattttttaaccaaacatgaactaaatatgaattt 27978504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 7683684 - 7683729
Alignment:
Q  115 aaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  7683684 aaaaaaattataattttttagcaaaacataaattaaatatgaattt 7683729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 5266217 - 5266257
Alignment:
Q  120 aattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  5266217 aattataattttttaacaaaacataaattaaatatgaattt 5266257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 48326553 - 48326511
Alignment:
Q  70 aataaatttttacatgaatgtttagaatattataagattctct 112  Q
    |||||| ||||||||||||||||||||| |||||||| |||||    
T  48326553 aataaaattttacatgaatgtttagaatgttataagaatctct 48326511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 9479043 - 9479112
Alignment:
Q  97 tattataagattctctttaaaacaattataattttttaccaaa-cataaattaaatatgaatttaatatt 165  Q
    |||||||||| || || ||||| ||||||| ||||||| |||| ||| |||||||||||||||| |||||    
T  9479043 tattataagaatcactctaaaaaaattatatttttttaacaaaacatgaattaaatatgaattttatatt 9479112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 25962141 - 25962193
Alignment:
Q  65 aatttaataaatttttacatgaatgtttagaatattataagattctctttaaaa 118  Q
    |||||||| | ||||||||||||| ||||||||||||||||| |||||| ||||    
T  25962141 aatttaatgagtttttacatgaat-tttagaatattataagaatctcttaaaaa 25962193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 3592456 - 3592382
Alignment:
Q  88 tgtttagaatattataagattctcttt---aaaacaattataattttttaccaaa-cataaattaaatatgaatt 158  Q
    ||||||||||||||||| | |||||||   |||| ||||| ||||||||| |||| ||| |||||||||||||||    
T  3592456 tgtttagaatattataataatctcttttagaaaaaaattagaattttttaacaaaacatgaattaaatatgaatt 3592382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 4053313 - 4053358
Alignment:
Q  115 aaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  4053313 aaaaaaattataattttttatcaaaacataaattaaatatgaattt 4053358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 8878673 - 8878600
Alignment:
Q  85 gaatgtttagaatattataagattctct-ttaaaacaattataatttttt-accaaacataaattaaatatgaa 156  Q
    |||||||||||||||||| ||| ||||| | |||| ||||| |||||||| || |||||| |||||||||||||    
T  8878673 gaatgtttagaatattattagaatctctctaaaaaaaattagaattttttaacaaaacatgaattaaatatgaa 8878600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 9407233 - 9407158
Alignment:
Q  87 atgtttagaatattataagattctct--ttaaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||||||||||||||||||| |||||    |||| ||||| ||||||||| |||| ||| ||||||||||||||||    
T  9407233 atgtttagaatattataagagtctctcccgaaaataattagaattttttaacaaagcatgaattaaatatgaattt 9407158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 41274301 - 41274232
Alignment:
Q  86 aatgtttagaatattataagattctctttaaaacaattataattttttaccaaa-cataaattaaatatg 154  Q
    ||||| ||||||||||||| | |||||  |||| ||||||| ||||||| |||| |||||||||||||||    
T  41274301 aatgtgtagaatattataaaaatctctccaaaaaaattatatttttttaacaaagcataaattaaatatg 41274232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 6126279 - 6126235
Alignment:
Q  116 aaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||||| |||||||||||| |||| ||||||||||||||||||||    
T  6126279 aaacaaatataattttttaacaaaacataaattaaatatgaattt 6126235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 9536541 - 9536616
Alignment:
Q  87 atgtttagaatattataagattct--ctttaaaacaattataattttttaccaaa-cataaattaaatatgaattt 159  Q
    |||| ||||||||||||| | |||  ||| |||| ||||| ||||||||| |||| ||||||||||||||||||||    
T  9536541 atgtgtagaatattataaaaatctttcttaaaaaaaattagaattttttaacaaaacataaattaaatatgaattt 9536616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University