View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_204 (Length: 237)
Name: NF3918_low_204
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_204 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 19785163 - 19785381
Alignment:
| Q |
2 |
ctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaatccagaa |
101 |
Q |
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| T |
19785163 |
ctaccaatgttcctacacttgctgactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaatccagaa |
19785262 |
T |
|
| Q |
102 |
agaagagtggaatgaaaggaaatctggatccaaaaataagcgtttgcaaccatcaaaccctttttctctaagaagaagaataaataaaaaacaacgccac |
201 |
Q |
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| T |
19785263 |
agaagagtggaatgaaaggaaatctggatcc---aataagcgcttgcaaccatcaaacccttttgctctaagaacaagaataaataaaaaacaacgccac |
19785359 |
T |
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| Q |
202 |
aaccacagggagcacaaaggtg |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
19785360 |
aaccacagggagcacaaaggtg |
19785381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 19796440 - 19796305
Alignment:
| Q |
1 |
gctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaatccaga |
100 |
Q |
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||||||||||||||| | || ||| ||||||| |||||||||||||||||||| || || |||||| ||||| ||||||||| | |||| ||| |||| |
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| T |
19796440 |
gctaccaatgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtcttctcgaaggttctgaagttcgcaaaacacaga |
19796341 |
T |
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| Q |
101 |
aagaagagtggaatgaaaggaaatctggatccaaaa |
136 |
Q |
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| T |
19796340 |
aagaagagtggagggaaaggaaatctggatccaaaa |
19796305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 15835678 - 15835568
Alignment:
| Q |
1 |
gctaccaatgttcctacacttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaatccaga |
100 |
Q |
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|||||||||||| || || | ||| ||||||||||||||||||||||||||| || || |||||| ||||| |||||| || | |||| |||| |||| |
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| T |
15835678 |
gctaccaatgtttcttcattcgctgcctttggttacttcaaagatctccctgagatcctctaccgtcttctcgaaggttttgaagttcgcgaaaagcaga |
15835579 |
T |
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| Q |
101 |
aagaagagtgg |
111 |
Q |
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| T |
15835578 |
aagaagagtgg |
15835568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 47713474 - 47713369
Alignment:
| Q |
19 |
cttgctcactttggttacttcaaagatctccctgaaattctataccgtattctccaaggttctggaattcgtgaaatccagaaagaagagtggaatgaaa |
118 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| || |||||| |||| |||||| | || ||| |||||||||||||||| |||||| ||| |
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| T |
47713474 |
cttgctgactttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaaggtaccaatatacgtaaaatccagaaagaagaatggaatcaaa |
47713375 |
T |
|
| Q |
119 |
ggaaat |
124 |
Q |
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||||| |
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| T |
47713374 |
agaaat |
47713369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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