View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_low_209 (Length: 236)
Name: NF3918_low_209
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_low_209 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 11762591 - 11762716
Alignment:
| Q |
28 |
gttattctaacagtgattgacttgtttttagtgttgttgttgagagtaattcggtggttgaggttgaaaaggtgaagaatgttatgatccggattggaat |
127 |
Q |
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| T |
11762591 |
gttattctaacagtgatcgacttgtttttagtgttgttgttgagagtaattcggtggttgtggttgaaaaagtgaagaatgttatgatccggattggaat |
11762690 |
T |
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| Q |
128 |
cggaattggaaattgaaaacatacag |
153 |
Q |
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| T |
11762691 |
cggaattggaaattgaaaacatacag |
11762716 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 47172406 - 47172355
Alignment:
| Q |
63 |
gttgttgagagtaattcggtggttgaggttgaaaaggtgaagaatgttatga |
114 |
Q |
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| T |
47172406 |
gttgttgagaataattcggtggttgaggttgaaaaggtgaagcatgttatga |
47172355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 42067537 - 42067572
Alignment:
| Q |
117 |
cggattggaatcggaattggaaattgaaaacataca |
152 |
Q |
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| T |
42067537 |
cggattggaatcggaattggaaattgaaaacataca |
42067572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 29192760 - 29192795
Alignment:
| Q |
117 |
cggattggaatcggaattggaaattgaaaacataca |
152 |
Q |
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| T |
29192760 |
cggattggaatcagaattggaaattgaaaacataca |
29192795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 25108106 - 25108139
Alignment:
| Q |
119 |
gattggaatcggaattggaaattgaaaacataca |
152 |
Q |
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| T |
25108106 |
gattggaatctgaattggaaattgaaaacataca |
25108139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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